Ss1.1-Tra1-TCH01H110093.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAGCGTTCGGCTTGCTCAAAGCCCGGCAGGAGAGGAGGCTGGCCGAGATCAACAGGGAG TTTCTCTGTGACCAGAAGTACAGTGATGAAGAGAACCTGCCGGAAAAGCTCGCGGCCTTC AAAGACCTGATGTCTTTAAAGAGGATGATGGAGAAGCTCGGGGTCCCCAAGACCCACCTG GAGATGAAGAAGATGATCTCGGAGGTGACCGGTGGGGGCAGCGACACCATCTCCTACAGA GACTTTGTGAACATGATGCTGGGAAAACGGTCCGCTGTCCTCAAGCTAGTCATGATGTTT GAAGGAAAAGCCAACGAGAGCAGCCCCAAGCCAGTTGGCCCCCCTCCAGAGAGAGACATT GCCAGCCTGCCCTGAGGACGCCCCCGCCTGGACCTGCCCCGCCCTCCCCTCTCCTCTTCC TCCCCTCTGACCTCGCCGCCCTTCTCGGCTCATTCCGATGTGTCTTGTGTGTTGTGTTTG GTCGTTGTGCCTTTGTTGGCTTGTTTTTTCATCAACAGAATCAGTGATCTCTTTGTAAAG CACAAATCATCTGCCTTAAGGGGGCTCTGCCCTCTCTTCCCTCCGTCTCCCCTCCCTGTG CAGAAGGGCTGACATTAAACCAAAAACTGGAGGGGGCGAGGCCAGGACGGGGTGGGGGGG GCACCCAGAAGCCCATGATCCCCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAGCGTTCGGCTTGCTCAAAGCCCGGCAGGAGAGGAGGCTGGCCGAGATCAACAGGGAG TTTCTCTGTGACCAGAAGTACAGTGATGAAGAGAACCTGCCGGAAAAGCTCGCGGCCTTC AAAGACCTGATGTCTTTAAAGAGGATGATGGAGAAGCTCGGGGTCCCCAAGACCCACCTG GAGATGAAGAAGATGATCTCGGAGGTGACCGGTGGGGGCAGCGACACCATCTCCTACAGA GACTTTGTGAACATGATGCTGGGAAAACGGTCCGCTGTCCTCAAGCTAGTCATGATGTTT GAAGGAAAAGCCAACGAGAGCAGCCCCAAGCCAGTTGGCCCCCCTCCAGAGAGAGACATT GCCAGCCTGCCCTGAGGACGCCCCCGCCTGGACCTGCCCCGCCCTCCCCTCTCCTCTTCC TCCCCTCTGACCTCGCCGCCCTTCTCGGCTCATTCCGATGTGTCTTGTGTGTTGTGTTTG GTCGTTGTGCCTTTGTTGGCTTGTTTTTTCATCAACAGAATCAGTGATCTCTTTGTAAAG CACAAATCATCTGCCTTAAGGGGGCTCTGCCCTCTCTTCCCTCCGTCTCCCCTCCCTGTG CAGAAGGGCTGACATTAAACCAAAAACTGGAGGGGGCGAGGCCAGGACGGGGTGGGGGGG GCACCCAGAAGCCCATGATCCCCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 127-245, - strand, RNAz p=0.714503 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 127-245, - strand, RNAz p=0.714503 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 123-284, gnl|bosTau2|chr23 (23274388-23274549) | |
| 123-284, gnl|canFam2|chr12 (4108664-4108791) | |
| 123-284, gnl|danRer3|chr5 (31983848-31983732) | |
| 123-284, gnl|dasNov1|scaffold_78863 (9731-9832) | |
| 123-284, gnl|echTel1|scaffold_277172 (392-516) | |
| 123-284, gnl|fr1|chrUn (174801820-174801949) | |
| 123-284, gnl|hg17|chr6 (31692087-31692214) | |
| 123-284, gnl|Hg17|chr6 (31692098-31692259) | |
| 123-284, gnl|loxAfr1|scaffold_216007 (595-722) | |
| 123-284, gnl|mm7|chr17 (33268607-33268480) | |
| 123-284, gnl|Mm7|chr17 (33268594-33268433) | |
| 123-284, gnl|oryCun1|scaffold_140311 (2813-2686) | |
| 123-284, gnl|panTro1|chr5 (32088418-32088545) | |
| 123-284, gnl|rheMac2|chr4 (31257610-31257737) | |
| 123-284, gnl|rn3|chr20 (3715657-3715784) | |
| 123-284, gnl|tetNig1|chr4 (2931265-2931390) | |
| 127-261, gnl|bosTau2|chr13 (55480167-55480038) | |
| 127-261, gnl|Hg17|chr9 (131022699-131025177) | |
| 127-261, gnl|Mm7|chr2 (31976943-31978215) | |
| 288-569, gnl|bosTau2|chr11 (81730730-81730991) | |
| 288-569, gnl|Hg17|chr9 (131025176-131025436) | |
| 288-569, gnl|Mm7|chr2 (31978214-31978460) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 123-284, gnl|bosTau2|chr23 (23274388-23274549) | |
| 123-284, gnl|canFam2|chr12 (4108664-4108791) | |
| 123-284, gnl|danRer3|chr5 (31983848-31983732) | |
| 123-284, gnl|dasNov1|scaffold_78863 (9731-9832) | |
| 123-284, gnl|echTel1|scaffold_277172 (392-516) | |
| 123-284, gnl|fr1|chrUn (174801820-174801949) | |
| 123-284, gnl|hg17|chr6 (31692087-31692214) | |
| 123-284, gnl|Hg17|chr6 (31692098-31692259) | |
| 123-284, gnl|loxAfr1|scaffold_216007 (595-722) | |
| 123-284, gnl|mm7|chr17 (33268607-33268480) | |
| 123-284, gnl|Mm7|chr17 (33268594-33268433) | |
| 123-284, gnl|oryCun1|scaffold_140311 (2813-2686) | |
| 123-284, gnl|panTro1|chr5 (32088418-32088545) | |
| 123-284, gnl|rheMac2|chr4 (31257610-31257737) | |
| 123-284, gnl|rn3|chr20 (3715657-3715784) | |
| 123-284, gnl|tetNig1|chr4 (2931265-2931390) | |
| 127-261, gnl|bosTau2|chr13 (55480167-55480038) | |
| 127-261, gnl|Hg17|chr9 (131022699-131025177) | |
| 127-261, gnl|Mm7|chr2 (31976943-31978215) | |
| 288-569, gnl|bosTau2|chr11 (81730730-81730991) | |
| 288-569, gnl|Hg17|chr9 (131025176-131025436) | |
| 288-569, gnl|Mm7|chr2 (31978214-31978460) |