Non-Coding RNA Search

Ss1.1-Tra1-TCH01H120043.5

Sequence:


               
               GTTAAACATTAAGCTCTTACCACCACAGGGATCCAGCTCAGTTTGACAAAGGAAGGAGCC
TGTTTATATAAGTACTTTCCCTCCCATATTTAATAATTCCAAAACTTAGTGATTTCCCAC
TTACTATAAACCACTGATAAGGGGCATTATTATGTCAGTATTCTTTGAAAAGAGCTTTTG
ACACAAAGGAAATGAGAATTTTTACTTTCTCTTCTGAATCTCAGTTGTCAGAAATGTCCA
CAAGAAAATTTTGCCACCTATGTTGACAGTTCCTTCGTCACATGTACCAGTATACTAATT
TGCCATTCAAGAGCTTGTGGTTCTGTGAAACTAAGAACAAAGTCTGGAAATAATTCATTA
GGTCAGGGTTTAAAAAACTTTGTGCTGTTATGATCAGTTACCAGCTTCAAGTAACAGAAA
TTTAAACTCAAACTGGTATAAATAGTATGGAAATAATCTTATGGGAAGTTCAACAGTAAT
GCAGTCTTTAGGGTAAATTGATTTATTGGGCTAAATCATGATTGTTAAAGAACTGAGCTC
TTTTCCCCCTCAACTCTGCCTGGGGTTGGCTTTTTTCCCTGGGCAGATGGCAAGACAGGT
TTCCTGTCCAGATAACAGCAGTGTCCAGAACTGCATCCTTTGAGGGCTTTCTCTTAAAAG
TGAGGAAGGTTTTTTCCCAGAAGCTCTCCCCTTTCTCCCCAGCAGACTTCTTCTTAATCA
TTGGCCAGAATTGGCTGGTGCCCGTTTTAGCCACTGACAAAGACCCAGGGGTTGGGATCA
GTGTGCCCCTGAGTCACATAGAAGAGCAGTAGATAGCTGCTGACTCAGCATCCACAGCAT
CCATTATAGTTAGTCAAGGGGTGTTTGTGTGTGTGTGTGTGTGTGTGCACGCGCGCACTC
TTCAACCCTGTTCCAGGTTTGGTTTTTCCATGGCTATTGCTGCTTCACTTGTTCAGTATC
CTGGGATAGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTAAACATTAAGCTCTTACCACCACAGGGATCCAGCTCAGTTTGACAAAGGAAGGAGCC
TGTTTATATAAGTACTTTCCCTCCCATATTTAATAATTCCAAAACTTAGTGATTTCCCAC
TTACTATAAACCACTGATAAGGGGCATTATTATGTCAGTATTCTTTGAAAAGAGCTTTTG
ACACAAAGGAAATGAGAATTTTTACTTTCTCTTCTGAATCTCAGTTGTCAGAAATGTCCA
CAAGAAAATTTTGCCACCTATGTTGACAGTTCCTTCGTCACATGTACCAGTATACTAATT
TGCCATTCAAGAGCTTGTGGTTCTGTGAAACTAAGAACAAAGTCTGGAAATAATTCATTA
GGTCAGGGTTTAAAAAACTTTGTGCTGTTATGATCAGTTACCAGCTTCAAGTAACAGAAA
TTTAAACTCAAACTGGTATAAATAGTATGGAAATAATCTTATGGGAAGTTCAACAGTAAT
GCAGTCTTTAGGGTAAATTGATTTATTGGGCTAAATCATGATTGTTAAAGAACTGAGCTC
TTTTCCCCCTCAACTCTGCCTGGGGTTGGCTTTTTTCCCTGGGCAGATGGCAAGACAGGT
TTCCTGTCCAGATAACAGCAGTGTCCAGAACTGCATCCTTTGAGGGCTTTCTCTTAAAAG
TGAGGAAGGTTTTTTCCCAGAAGCTCTCCCCTTTCTCCCCAGCAGACTTCTTCTTAATCA
TTGGCCAGAATTGGCTGGTGCCCGTTTTAGCCACTGACAAAGACCCAGGGGTTGGGATCA
GTGTGCCCCTGAGTCACATAGAAGAGCAGTAGATAGCTGCTGACTCAGCATCCACAGCAT
CCATTATAGTTAGTCAAGGGGTGTTTGTGTGTGTGTGTGTGTGTGTGCACGCGCGCACTC
TTCAACCCTGTTCCAGGTTTGGTTTTTCCATGGCTATTGCTGCTTCACTTGTTCAGTATC
CTGGGATAGAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               479-598, - strand, RNAz p=0.903971

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               479-598, - strand, RNAz p=0.903971

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               20-178, gnl|bosTau2|chr6 (27821138-27820995)
               

               
               20-178, gnl|canFam2|chr8 (17893293-17893530)
               

               
               20-178, gnl|dasNov1|scaffold_25523 (11379-11155)
               

               
               20-178, gnl|hg17|chr14 (35840847-35841095)
               

               
               20-178, gnl|Hg17|chr14 (35841061-35840915)
               

               
               20-178, gnl|mm7|chr12 (54262077-54262323)
               

               
               20-178, gnl|panTro1|chr15 (35169872-35170120)
               

               
               20-178, gnl|rheMac2|chr7 (99270399-99270650)
               

               
               20-178, gnl|rn3|chr6 (76734274-76734505)
               


               
               217-598, gnl|bosTau2|chr6 (27820993-27820597)
               

               
               217-598, gnl|Hg17|chr14 (35840875-35840495)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-178, gnl|bosTau2|chr6 (27821138-27820995)
               

               
               20-178, gnl|canFam2|chr8 (17893293-17893530)
               

               
               20-178, gnl|dasNov1|scaffold_25523 (11379-11155)
               

               
               20-178, gnl|hg17|chr14 (35840847-35841095)
               

               
               20-178, gnl|Hg17|chr14 (35841061-35840915)
               

               
               20-178, gnl|mm7|chr12 (54262077-54262323)
               

               
               20-178, gnl|panTro1|chr15 (35169872-35170120)
               

               
               20-178, gnl|rheMac2|chr7 (99270399-99270650)
               

               
               20-178, gnl|rn3|chr6 (76734274-76734505)
               


               
               217-598, gnl|bosTau2|chr6 (27820993-27820597)
               

               
               217-598, gnl|Hg17|chr14 (35840875-35840495)

	20-178, gnl\|bosTau2\|chr6 (27821138-27820995)
	20-178, gnl\|canFam2\|chr8 (17893293-17893530)
	20-178, gnl\|dasNov1\|scaffold_25523 (11379-11155)
	20-178, gnl\|hg17\|chr14 (35840847-35841095)
	20-178, gnl\|Hg17\|chr14 (35841061-35840915)
	20-178, gnl\|mm7\|chr12 (54262077-54262323)
	20-178, gnl\|panTro1\|chr15 (35169872-35170120)
	20-178, gnl\|rheMac2\|chr7 (99270399-99270650)
	20-178, gnl\|rn3\|chr6 (76734274-76734505)

	217-598, gnl\|bosTau2\|chr6 (27820993-27820597)
	217-598, gnl\|Hg17\|chr14 (35840875-35840495)