Non-Coding RNA Search

Ss1.1-Tra1-TCH01H120061.5

Sequence:


               
               AGTGGTCGGGCCCGAGGGTGATGGGCAGCGAGCCCCGCGAGCCCCAGCGGCCTGGGAGAG
CGAGGGGCGGCGCGAGGCCGGGGGCGGGGCGGAGCGGAGCGGGTGGGGCCGAGCTTGGGC
TGCTGGGATGCTGCGTCTCTGGAGACAGGAGGTTGGCAACCAATGCCCTCCTCCCCACCC
GGGACCCTCATGCCTTCTAACTCTTGCTTCTTTCTGGATACCGCAGTGGCATCTTTCTTA
CCTTGTGCGTTCTCCGGGCTCGAGATCTTTCTTCCGGAACCATGTCAGAAGGAGTGGATT
TAATTGATATATACGCTGACGAGGAATTCAATCAGGTGAGGGGTCATCTGGAGCTTTGGG
AGTTCCCTGTGTCAGCGGAGGAAGCCCTTGCGGCAACACAGCCCTCAGATGACAGAAGCA
GCAGCACTGAGCCACCTCCTCCTGTTCGCCAGGAGCCGTCTCCCAAGCCCAATAACAAGA
CCCCTGCGATTCTGTACACCTACAGTGGCCTGCGTAATAGGCGAGCTGCCGTCTATGTGG
GCAGTTTCTCCTGGTGGACCACAGACCAGCAGCTGATCCAGGTTATTCGCTCTATAGGAG
TCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGAGCAAATGGCCAGTCCAAAGGGT
ATGCTGAGGTGGTGGTAGCCTCTGAAAACTCTGTCCACAAATTGTTGGAACTTCTGCCAG
GAAAAGTTCTTAATGGAGAAAAAGTGGACGTGAGGCCGGCCACCCGGCAGAACCTGTCAC
AGTTTGAGGCACAGGCTCGGAAACGTGAGTGCGTCCGAGTCCCAAGAGGGGGTACGTGGA
GACCATCTGTATGAAGGGGGGCACTTGTTGGTTGGTTTTCTGTGGGGTGGGCTTGGCCTA
CAATGTGGAGAAGTTTGAGGGAGGGTGGTGGTGATTACGGGTGGCACCCTGGCAATGGGT
AAGCCAAAAAAAAATGAGGCTTGTTTGTAAGACAGACCACTATGCTAGGAGTCAGGAAGG
TTCAGGTTATAGTTTGGTTCTGCCACCAACTCATTGTGTGACCTTGGATGAGTCACTTGA
CTGCTTAGGGCCTACTTTCCCATCTGAACTAGACACACGATGTATAAAATTCCTGTTAAA
TCTAAATTATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGGTCGGGCCCGAGGGTGATGGGCAGCGAGCCCCGCGAGCCCCAGCGGCCTGGGAGAG
CGAGGGGCGGCGCGAGGCCGGGGGCGGGGCGGAGCGGAGCGGGTGGGGCCGAGCTTGGGC
TGCTGGGATGCTGCGTCTCTGGAGACAGGAGGTTGGCAACCAATGCCCTCCTCCCCACCC
GGGACCCTCATGCCTTCTAACTCTTGCTTCTTTCTGGATACCGCAGTGGCATCTTTCTTA
CCTTGTGCGTTCTCCGGGCTCGAGATCTTTCTTCCGGAACCATGTCAGAAGGAGTGGATT
TAATTGATATATACGCTGACGAGGAATTCAATCAGGTGAGGGGTCATCTGGAGCTTTGGG
AGTTCCCTGTGTCAGCGGAGGAAGCCCTTGCGGCAACACAGCCCTCAGATGACAGAAGCA
GCAGCACTGAGCCACCTCCTCCTGTTCGCCAGGAGCCGTCTCCCAAGCCCAATAACAAGA
CCCCTGCGATTCTGTACACCTACAGTGGCCTGCGTAATAGGCGAGCTGCCGTCTATGTGG
GCAGTTTCTCCTGGTGGACCACAGACCAGCAGCTGATCCAGGTTATTCGCTCTATAGGAG
TCTATGATGTGGTGGAGTTGAAATTTGCAGAGAATCGAGCAAATGGCCAGTCCAAAGGGT
ATGCTGAGGTGGTGGTAGCCTCTGAAAACTCTGTCCACAAATTGTTGGAACTTCTGCCAG
GAAAAGTTCTTAATGGAGAAAAAGTGGACGTGAGGCCGGCCACCCGGCAGAACCTGTCAC
AGTTTGAGGCACAGGCTCGGAAACGTGAGTGCGTCCGAGTCCCAAGAGGGGGTACGTGGA
GACCATCTGTATGAAGGGGGGCACTTGTTGGTTGGTTTTCTGTGGGGTGGGCTTGGCCTA
CAATGTGGAGAAGTTTGAGGGAGGGTGGTGGTGATTACGGGTGGCACCCTGGCAATGGGT
AAGCCAAAAAAAAATGAGGCTTGTTTGTAAGACAGACCACTATGCTAGGAGTCAGGAAGG
TTCAGGTTATAGTTTGGTTCTGCCACCAACTCATTGTGTGACCTTGGATGAGTCACTTGA
CTGCTTAGGGCCTACTTTCCCATCTGAACTAGACACACGATGTATAAAATTCCTGTTAAA
TCTAAATTATGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61835873|ref|XP_581119.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61835873|ref|XP_581119.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               397-561, - strand, RNAz p=0.957866
               

               
               651-887, + strand, RNAz p=0.993698

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               397-561, - strand, RNAz p=0.957866
               

               
               651-887, + strand, RNAz p=0.993698

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               4-396, gnl|bosTau2|chr29 (31022506-31022119)
               

               
               4-396, gnl|Hg17|chr11 (60953547-60953169)
               

               
               4-396, gnl|Mm7|chr19 (10205857-10206226)
               


               
               397-561, gnl|bosTau2|chr29 (31015691-31015527)
               

               
               397-561, gnl|Hg17|chr11 (60945595-60945431)
               

               
               397-561, gnl|Mm7|chr19 (10211967-10212131)
               


               
               651-969, gnl|bosTau2|chr29 (31014237-31013917)
               

               
               651-969, gnl|Hg17|chr11 (60944150-60943813)
               

               
               651-969, gnl|Mm7|chr19 (10213410-10213716)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-396, gnl|bosTau2|chr29 (31022506-31022119)
               

               
               4-396, gnl|Hg17|chr11 (60953547-60953169)
               

               
               4-396, gnl|Mm7|chr19 (10205857-10206226)
               


               
               397-561, gnl|bosTau2|chr29 (31015691-31015527)
               

               
               397-561, gnl|Hg17|chr11 (60945595-60945431)
               

               
               397-561, gnl|Mm7|chr19 (10211967-10212131)
               


               
               651-969, gnl|bosTau2|chr29 (31014237-31013917)
               

               
               651-969, gnl|Hg17|chr11 (60944150-60943813)
               

               
               651-969, gnl|Mm7|chr19 (10213410-10213716)

	397-561, - strand, RNAz p=0.957866
	651-887, + strand, RNAz p=0.993698

	4-396, gnl\|bosTau2\|chr29 (31022506-31022119)
	4-396, gnl\|Hg17\|chr11 (60953547-60953169)
	4-396, gnl\|Mm7\|chr19 (10205857-10206226)

	397-561, gnl\|bosTau2\|chr29 (31015691-31015527)
	397-561, gnl\|Hg17\|chr11 (60945595-60945431)
	397-561, gnl\|Mm7\|chr19 (10211967-10212131)

	651-969, gnl\|bosTau2\|chr29 (31014237-31013917)
	651-969, gnl\|Hg17\|chr11 (60944150-60943813)
	651-969, gnl\|Mm7\|chr19 (10213410-10213716)