Non-Coding RNA Search

Ss1.1-Utr1-UTR010006B02.5

Sequence:


               
               TTAGGTGCCCTGGAGCTATTTAAACTTCTATTTTGAAAGTATGGCCACATTGCTACAGCC
TAGAAATCAGGTGAAAAGTCAGTGTAGACAGTGCTCCAAGCTAACCATGGTGATGACTGT
GAAAGCTTCAGATGAGAGAGTCCTACAAGTTTTGGACCCATCACAGAAACAAATTTAAAC
TCCATCTGCCAACACACATTACCTTAAACTTAGCCAAGTTACATTTCATCTGCCATTGGC
TATCCAAACCTCTGTTCTGTTAAGACCATCTGGAGCTCCCTAACATCCTTTATGGTTTTA
CTGTCCAAAACAAATAGTGTTATCATTAAACCTGGCCAACTTACTGTCTTTTTCATTTTC
AAATCACTAATAAGTACATCTGTCCAATAGCATTAGCCTACAGACAGGCTCCAGAGTTGT
TCCCTGTTGACCTTTTCACTGGAAGACTTCTCTGTGTGATTTTCTTTCTCATCATCTAAT
CAATCCATGACCATATGTGGATCCTTGGTCTAGAGTCACTTAAGGAAGAGCATGTGAACA
TTAAAGGCACCTCAAGGAAGGGACAGTGAGTTATCAGGGAGTGGGAAGACCTGAAGCCAG
CCAAGTAAATATAGTTATTAATTTGGTATTCGAAATGAATTAGCTTCATATGTTTTTTTG
ACTTTTGGAGCAGCCGTGTGCTTCTAATAGGCTAGCATCATGGAGGTGGATACCTCTTAC
AGTATAAGAAATAATTGAAAGAAGGTATAACTGAAGACACATCTGGAGTTCCCATCGTGG
CGCAGTGATTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGGTGCCCTGGAGCTATTTAAACTTCTATTTTGAAAGTATGGCCACATTGCTACAGCC
TAGAAATCAGGTGAAAAGTCAGTGTAGACAGTGCTCCAAGCTAACCATGGTGATGACTGT
GAAAGCTTCAGATGAGAGAGTCCTACAAGTTTTGGACCCATCACAGAAACAAATTTAAAC
TCCATCTGCCAACACACATTACCTTAAACTTAGCCAAGTTACATTTCATCTGCCATTGGC
TATCCAAACCTCTGTTCTGTTAAGACCATCTGGAGCTCCCTAACATCCTTTATGGTTTTA
CTGTCCAAAACAAATAGTGTTATCATTAAACCTGGCCAACTTACTGTCTTTTTCATTTTC
AAATCACTAATAAGTACATCTGTCCAATAGCATTAGCCTACAGACAGGCTCCAGAGTTGT
TCCCTGTTGACCTTTTCACTGGAAGACTTCTCTGTGTGATTTTCTTTCTCATCATCTAAT
CAATCCATGACCATATGTGGATCCTTGGTCTAGAGTCACTTAAGGAAGAGCATGTGAACA
TTAAAGGCACCTCAAGGAAGGGACAGTGAGTTATCAGGGAGTGGGAAGACCTGAAGCCAG
CCAAGTAAATATAGTTATTAATTTGGTATTCGAAATGAATTAGCTTCATATGTTTTTTTG
ACTTTTGGAGCAGCCGTGTGCTTCTAATAGGCTAGCATCATGGAGGTGGATACCTCTTAC
AGTATAAGAAATAATTGAAAGAAGGTATAACTGAAGACACATCTGGAGTTCCCATCGTGG
CGCAGTGATTAA

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               2-114, - strand, RNAz p=0.545987
               

               
               194-352, - strand, RNAz p=0.689509
               

               
               393-512, - strand, RNAz p=0.916343
               

               
               593-710, + strand, RNAz p=0.9615

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-114, - strand, RNAz p=0.545987
               

               
               194-352, - strand, RNAz p=0.689509
               

               
               393-512, - strand, RNAz p=0.916343
               

               
               593-710, + strand, RNAz p=0.9615

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-765, gnl|bosTau2|chr10 (7403900-7404658)
               

               
               2-765, gnl|Hg17|chr15 (65649320-65650062)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-765, gnl|bosTau2|chr10 (7403900-7404658)
               

               
               2-765, gnl|Hg17|chr15 (65649320-65650062)

	2-114, - strand, RNAz p=0.545987
	194-352, - strand, RNAz p=0.689509
	393-512, - strand, RNAz p=0.916343
	593-710, + strand, RNAz p=0.9615

	2-765, gnl\|bosTau2\|chr10 (7403900-7404658)
	2-765, gnl\|Hg17\|chr15 (65649320-65650062)