Non-Coding RNA Search

Ss1.1-Utr1-UTR010006E11.5

Sequence:


               
               AAAAGAGGAGATGGCGCCAGTCAGGGAGCGGCAGTGGCCGACACTGTGAGGAAGCGCGAA
GGCGGAGTAACCGGAGAAGCCTCGGGAGAAGCGCCAGAGCCCTCGCCGCCGCTACCACCG
CTACCACCATGGAAGGGACAAAACCGACACTGCAGCTCGTGTACCAGGCAGTGCAGGCGC
TCTACCACGACCCAGATCCCAGCGGAAAGGAGCGCGCCTCCTTTTGGCTTGGGGAGCTGC
AGCGTCCGGTTCATGCATGGGAGATTTCAGATCAATTGTTACAGATCCGACAGGATGTGG
AATCATGCTATTTTGCTGCACAGACCATGAAAATGAAGATTCAGACCTCATTTTATGAGC
TTCCCACAGATTCTCATGCCTCTTTACGGGACTCATTACTAACCCATATCCAGAACTTGA
AAGACTTGTCACCTGTCATTGTAACTCAGCTGGCTTTAGCAATAGCCGACCTTGCTCTAC
AGATGCCTTCCTGGAAGGGATGTGTACAAACATTGGTGGAAAAATATAGCAATGATGTAA
CTTCTCTGCCTTTTCTGCTGGAGATCCTTACAGTGTTACCTGAAGAAGTACACAGTCGTT
CCTTACGAATTGGAGCTAACCGGCGTACAGAAATTATAGAAGATTTGGCCTTTTATTCTA
GTACAGTGGTATCTCTGTTGGTGAGTGTGTTTGAAATACTGAGTTGCTGCCTAGGGTCAA
AAAGCCTTGGTGGTTATTTTGTCATTCAGTTGCATCATTGTGAAGTAGCTTTCTTAGCAA
AATTTTGCAATGATAATACTATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGAGGAGATGGCGCCAGTCAGGGAGCGGCAGTGGCCGACACTGTGAGGAAGCGCGAA
GGCGGAGTAACCGGAGAAGCCTCGGGAGAAGCGCCAGAGCCCTCGCCGCCGCTACCACCG
CTACCACCATGGAAGGGACAAAACCGACACTGCAGCTCGTGTACCAGGCAGTGCAGGCGC
TCTACCACGACCCAGATCCCAGCGGAAAGGAGCGCGCCTCCTTTTGGCTTGGGGAGCTGC
AGCGTCCGGTTCATGCATGGGAGATTTCAGATCAATTGTTACAGATCCGACAGGATGTGG
AATCATGCTATTTTGCTGCACAGACCATGAAAATGAAGATTCAGACCTCATTTTATGAGC
TTCCCACAGATTCTCATGCCTCTTTACGGGACTCATTACTAACCCATATCCAGAACTTGA
AAGACTTGTCACCTGTCATTGTAACTCAGCTGGCTTTAGCAATAGCCGACCTTGCTCTAC
AGATGCCTTCCTGGAAGGGATGTGTACAAACATTGGTGGAAAAATATAGCAATGATGTAA
CTTCTCTGCCTTTTCTGCTGGAGATCCTTACAGTGTTACCTGAAGAAGTACACAGTCGTT
CCTTACGAATTGGAGCTAACCGGCGTACAGAAATTATAGAAGATTTGGCCTTTTATTCTA
GTACAGTGGTATCTCTGTTGGTGAGTGTGTTTGAAATACTGAGTTGCTGCCTAGGGTCAA
AAAGCCTTGGTGGTTATTTTGTCATTCAGTTGCATCATTGTGAAGTAGCTTTCTTAGCAA
AATTTTGCAATGATAATACTATGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8BKX4_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BKX4_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               133-250, - strand, RNAz p=0.635836

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               133-250, - strand, RNAz p=0.635836

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-250, gnl|bosTau2|chr4 (49919601-49919849)
               

               
               2-250, gnl|Hg17|chr7 (128288905-128288654)
               

               
               2-250, gnl|Mm7|chr6 (29541762-29541510)
               


               
               524-803, gnl|bosTau2|chr4 (49947785-49948060)
               

               
               524-803, gnl|Hg17|chr7 (128249140-128248865)
               

               
               524-803, gnl|Mm7|chr6 (29518340-29518065)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-250, gnl|bosTau2|chr4 (49919601-49919849)
               

               
               2-250, gnl|Hg17|chr7 (128288905-128288654)
               

               
               2-250, gnl|Mm7|chr6 (29541762-29541510)
               


               
               524-803, gnl|bosTau2|chr4 (49947785-49948060)
               

               
               524-803, gnl|Hg17|chr7 (128249140-128248865)
               

               
               524-803, gnl|Mm7|chr6 (29518340-29518065)

	2-250, gnl\|bosTau2\|chr4 (49919601-49919849)
	2-250, gnl\|Hg17\|chr7 (128288905-128288654)
	2-250, gnl\|Mm7\|chr6 (29541762-29541510)

	524-803, gnl\|bosTau2\|chr4 (49947785-49948060)
	524-803, gnl\|Hg17\|chr7 (128249140-128248865)
	524-803, gnl\|Mm7\|chr6 (29518340-29518065)