Non-Coding RNA Search

Ss1.1-Utr1-UTR010013G02.5

Sequence:


               
               AAATGTTTAGCTTGCATATTGCCTGAGACAGAGCTGGCGAGACGCCAGACGGGCAGGGTA
TTATTAGGAAAGCTGAGCAAATAGCTCGCAGGGAAAAGAGCTGTGAATTTTGAAACCTTC
AGGTATTGTCATGTCAGAGAGTCTTAGGAGTTCAACAGAGATGCTGCTTTTGTCTGTAGA
TTTTAAAAAATTTCCAGCAAACAATCCTCTTTGAAAATGACTCTGCAGTCTGTGAAATAT
ACTTTGTTGTAAGTTTTATTCCCTAAGTTTGCTCAGAGATTTCCTCCACTGTGTTAAATC
TCCTGGTTCATACTGAGAAAGATGGAAACTCCTCAGGAAGGGGTAGGTGTTGGCCCACTG
CGCCACCTCAGGATGGAAAAACCCCGCCCCTTGCGCCCCGGCACCAAAGAGGGACCGTGA
GTCTAGGTGAGAGCAGAAACAGGAAGGGGTGGGATGCAGGAAGGTGGGTTTGAAAGTCCA
AAGACTGTTTTGTGTAACTGCTGCTTCTCCTCCAGCCAATACGGAAAGAGTTGCTGAGCT
TTTCAGGACAAGATGCGTCTGTTGCCTGCAGCTGAGAGTCAGGACAAGCTGAGGAAGTAT
TTGAGGACCACTTAGGGCTGGGGTTCAAGTGAGGCGCAGAGCTGAGTGGGTTGCGAGACT
GATTTCATCATGTGCCCAATATCTGTGATTCTTTTCAAGGGGTCTTGGTAGGGTGACTTT
GAATGGGGTGCGGAGGTCAGCAGGACTTGGTGCAAGTCCTCATTAAGCAGATTCATTGTT
TTCAGTGTCTTGGCACAAGAGGAGGGTCCGAGAAATGGGCAGAACTCCACAGGTGTCACG
CAGCCAGCAGGGCAGGACCTGACTCTCTTGAGGAGAGCGTGGGCGATGAGGCCTGAGAGG
CACCCTGTCAAGGGGGAGGAGGCTGGTGGCCGAGGAACCAATGGCCCTGAAGCCTCACAA
CACCACACTATGGGGAGGGAAGGTGCAGGGAGGGGAAAGAAGGTTTGGAGTCCAAACATG
TCCTCTTGTCGTCCCAGCTCCTCCCAATTAGATATGTGTCCTTGATCAGTCACTTTATCT
CCATGGGCAGCAGCTTCCTCTGCTCTAAATGGACAGGAAGGACTGAGGAATCAGTGGGAA
GCTAAGCCTATTCCAGCCCTAATATCCTAGATGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGTTTAGCTTGCATATTGCCTGAGACAGAGCTGGCGAGACGCCAGACGGGCAGGGTA
TTATTAGGAAAGCTGAGCAAATAGCTCGCAGGGAAAAGAGCTGTGAATTTTGAAACCTTC
AGGTATTGTCATGTCAGAGAGTCTTAGGAGTTCAACAGAGATGCTGCTTTTGTCTGTAGA
TTTTAAAAAATTTCCAGCAAACAATCCTCTTTGAAAATGACTCTGCAGTCTGTGAAATAT
ACTTTGTTGTAAGTTTTATTCCCTAAGTTTGCTCAGAGATTTCCTCCACTGTGTTAAATC
TCCTGGTTCATACTGAGAAAGATGGAAACTCCTCAGGAAGGGGTAGGTGTTGGCCCACTG
CGCCACCTCAGGATGGAAAAACCCCGCCCCTTGCGCCCCGGCACCAAAGAGGGACCGTGA
GTCTAGGTGAGAGCAGAAACAGGAAGGGGTGGGATGCAGGAAGGTGGGTTTGAAAGTCCA
AAGACTGTTTTGTGTAACTGCTGCTTCTCCTCCAGCCAATACGGAAAGAGTTGCTGAGCT
TTTCAGGACAAGATGCGTCTGTTGCCTGCAGCTGAGAGTCAGGACAAGCTGAGGAAGTAT
TTGAGGACCACTTAGGGCTGGGGTTCAAGTGAGGCGCAGAGCTGAGTGGGTTGCGAGACT
GATTTCATCATGTGCCCAATATCTGTGATTCTTTTCAAGGGGTCTTGGTAGGGTGACTTT
GAATGGGGTGCGGAGGTCAGCAGGACTTGGTGCAAGTCCTCATTAAGCAGATTCATTGTT
TTCAGTGTCTTGGCACAAGAGGAGGGTCCGAGAAATGGGCAGAACTCCACAGGTGTCACG
CAGCCAGCAGGGCAGGACCTGACTCTCTTGAGGAGAGCGTGGGCGATGAGGCCTGAGAGG
CACCCTGTCAAGGGGGAGGAGGCTGGTGGCCGAGGAACCAATGGCCCTGAAGCCTCACAA
CACCACACTATGGGGAGGGAAGGTGCAGGGAGGGGAAAGAAGGTTTGGAGTCCAAACATG
TCCTCTTGTCGTCCCAGCTCCTCCCAATTAGATATGTGTCCTTGATCAGTCACTTTATCT
CCATGGGCAGCAGCTTCCTCTGCTCTAAATGGACAGGAAGGACTGAGGAATCAGTGGGAA
GCTAAGCCTATTCCAGCCCTAATATCCTAGATGGTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-115, + strand, RNAz p=0.976209

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-115, + strand, RNAz p=0.976209

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-770, gnl|bosTau2|chr11 (46933878-46933114)
               

               
               1-770, gnl|Hg17|chr2 (66692302-66693085)
               

               
               1-770, gnl|Mm7|chr11 (18852165-18851449)
               


               
               976-1175, gnl|bosTau2|chr11 (46932699-46932498)
               

               
               976-1175, gnl|Mm7|chr11 (18851243-18851055)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-770, gnl|bosTau2|chr11 (46933878-46933114)
               

               
               1-770, gnl|Hg17|chr2 (66692302-66693085)
               

               
               1-770, gnl|Mm7|chr11 (18852165-18851449)
               


               
               976-1175, gnl|bosTau2|chr11 (46932699-46932498)
               

               
               976-1175, gnl|Mm7|chr11 (18851243-18851055)

	1-770, gnl\|bosTau2\|chr11 (46933878-46933114)
	1-770, gnl\|Hg17\|chr2 (66692302-66693085)
	1-770, gnl\|Mm7\|chr11 (18852165-18851449)

	976-1175, gnl\|bosTau2\|chr11 (46932699-46932498)
	976-1175, gnl\|Mm7\|chr11 (18851243-18851055)