Non-Coding RNA Search

Ss1.1-Utr1-UTR010018E11.5

Sequence:


               
               ATTTGACCTTCCCTCCNAAAAGGGAAAATCTGAAAGAAATCTATAAAAGCATCTTTTGAA
AGGCATCAATGACATAAGAAGATAGAAATGTGAGTCAGAAGGAGATTGGAGCTCAGGGAA
ATGAGCCGGAACTCTTTCTATCCCAGTGTACCTGCCTCCCCAGGAGAATCACTAAGAACA
GTTGCTCCAGGCAAGTTACACAAGATGTAGGGGACAGGCGTCAGGTCCAGTGGCGAGCCT
GGTCTATTTCCACCTGCCTCTGCCACCTGAAGGACTAACCAAAAGAGGCAGTTAAAGAGG
GAGCCTATGTGGCAGATTCATGCAGCTGAAGGAAAAATAGTTCGAGCTAAGAACTCACCA
AAGGTGGAGATCTTGGTACAGTAATCCCTGGTCCAGGTTGTAAACTCAAAGGAAACCATT
CCAAAGGTAGAGTAAAGAAGGTAATCCAAGAGTTATAAATCCATGACACTGAACAACCAG
CACCCTTCGGAGTCTCATAGAAGGAGATGAAGGATGCTAATAATATGCTAGGTCTCCAGT
TATTTCTATAAGTAATTTTTTCAAAAAAATTGGCCAGCAAACTATAAAAGACTACAAAGC
ACTTGAAGAGACAAAGCAGCATGCAACAAAATCAATAGAAAATATAGAATAGAGGTATGT
CATGTGAAAGATACATTGAGCTCTAACATAATTAAATGGTGTCTCAAAAGGAGTGGAGAG
ACTGAGATATAGGTAAAACTTGAAAAGACAATAGCTGAGAATTTCCCAGAAACAGTGAAG
GAAATCCATTCACTGGTTCAGAAGCCCAAGCAGGATAAGTAAAAGTAAATTTGCATCTAG
ACACTTCAGATGAAAACTGCAGAAAATCGAAAACAAAGACAAAAGAAAATCAAAATCTAA
AAATCAGAGTTGTTTGATTGACAACTAGTTTTTCAACAGCAATGCTGAAGATGAAGAAAA
AAAAGTAACACCGTCTAGAAACTATCTTCTTAAAATGAAACTGAAACAAAGACATTTTTA
AACAAAAACTGAGAGAATGGACAACCAGCAAACCCACACAAAAAGAATTCTCCAAGGTAG
TCTTCAATTAGGCGGAAGATTATCCCACATGGAACCTCAGAGATGCATCAAAGAATAAAA
AGCAAAGAACAATTTAAAAGAGGGGTTGGTTTATGTGAACATTAGCTCTATGAAACAGTA
ATAATGTGGTGCTGAAAGTATTTATCCTAATATTTTAAAGAACTAAAATATACAGCCACC
ATAGCTCTAAGAGCTGTGAGAGTAATAATAGATGATCTTTGCATAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTGACCTTCCCTCCNAAAAGGGAAAATCTGAAAGAAATCTATAAAAGCATCTTTTGAA
AGGCATCAATGACATAAGAAGATAGAAATGTGAGTCAGAAGGAGATTGGAGCTCAGGGAA
ATGAGCCGGAACTCTTTCTATCCCAGTGTACCTGCCTCCCCAGGAGAATCACTAAGAACA
GTTGCTCCAGGCAAGTTACACAAGATGTAGGGGACAGGCGTCAGGTCCAGTGGCGAGCCT
GGTCTATTTCCACCTGCCTCTGCCACCTGAAGGACTAACCAAAAGAGGCAGTTAAAGAGG
GAGCCTATGTGGCAGATTCATGCAGCTGAAGGAAAAATAGTTCGAGCTAAGAACTCACCA
AAGGTGGAGATCTTGGTACAGTAATCCCTGGTCCAGGTTGTAAACTCAAAGGAAACCATT
CCAAAGGTAGAGTAAAGAAGGTAATCCAAGAGTTATAAATCCATGACACTGAACAACCAG
CACCCTTCGGAGTCTCATAGAAGGAGATGAAGGATGCTAATAATATGCTAGGTCTCCAGT
TATTTCTATAAGTAATTTTTTCAAAAAAATTGGCCAGCAAACTATAAAAGACTACAAAGC
ACTTGAAGAGACAAAGCAGCATGCAACAAAATCAATAGAAAATATAGAATAGAGGTATGT
CATGTGAAAGATACATTGAGCTCTAACATAATTAAATGGTGTCTCAAAAGGAGTGGAGAG
ACTGAGATATAGGTAAAACTTGAAAAGACAATAGCTGAGAATTTCCCAGAAACAGTGAAG
GAAATCCATTCACTGGTTCAGAAGCCCAAGCAGGATAAGTAAAAGTAAATTTGCATCTAG
ACACTTCAGATGAAAACTGCAGAAAATCGAAAACAAAGACAAAAGAAAATCAAAATCTAA
AAATCAGAGTTGTTTGATTGACAACTAGTTTTTCAACAGCAATGCTGAAGATGAAGAAAA
AAAAGTAACACCGTCTAGAAACTATCTTCTTAAAATGAAACTGAAACAAAGACATTTTTA
AACAAAAACTGAGAGAATGGACAACCAGCAAACCCACACAAAAAGAATTCTCCAAGGTAG
TCTTCAATTAGGCGGAAGATTATCCCACATGGAACCTCAGAGATGCATCAAAGAATAAAA
AGCAAAGAACAATTTAAAAGAGGGGTTGGTTTATGTGAACATTAGCTCTATGAAACAGTA
ATAATGTGGTGCTGAAAGTATTTATCCTAATATTTTAAAGAACTAAAATATACAGCCACC
ATAGCTCTAAGAGCTGTGAGAGTAATAATAGATGATCTTTGCATAACT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               701-858, - strand, RNAz p=0.998851

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               701-858, - strand, RNAz p=0.998851

Similar Transcript(s): 2 entry(ies)

More info

Similar Transcript(s): 2 entry(ies)

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               701-858, BP440469 full-length enriched swine cDNA library, adult lung Sus 
(dbj|BP440469.1|), blast E-value=0, identity=100% 
               

               
               707-858, DB802622 full-length enriched swine cDNA library, adult skin Sus 
(dbj|DB802622.1|), blast E-value=0, identity=100%

Similar Transcript(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               701-858, BP440469 full-length enriched swine cDNA library, adult lung Sus 
(dbj|BP440469.1|), blast E-value=0, identity=100% 
               

               
               707-858, DB802622 full-length enriched swine cDNA library, adult skin Sus 
(dbj|DB802622.1|), blast E-value=0, identity=100%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               492-1251, gnl|bosTau2|chr8 (20611075-20611835)
               

               
               492-1251, gnl|Hg17|chr9 (68362755-68363805)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               492-1251, gnl|bosTau2|chr8 (20611075-20611835)
               

               
               492-1251, gnl|Hg17|chr9 (68362755-68363805)

	701-858, BP440469 full-length enriched swine cDNA library, adult lung Sus (dbj\|BP440469.1\|), blast E-value=0, identity=100%
	707-858, DB802622 full-length enriched swine cDNA library, adult skin Sus (dbj\|DB802622.1\|), blast E-value=0, identity=100%

	492-1251, gnl\|bosTau2\|chr8 (20611075-20611835)
	492-1251, gnl\|Hg17\|chr9 (68362755-68363805)