Non-Coding RNA Search

Ss1.1-Utr1-UTR010021E11.5

Sequence:


               
               GGGGAATTAGCCTAAGTTATTAAAGATGGCGGCGGAGCGGAGTCGCTCCCCGATGGACTC
GCCGGTCCCGGCCTCTATGTTCGCCCCCGAGCCTAGCTCTCCAGGGGCGGCCAAGGCCGC
GGCGGCGGCTGCCCGGCTCCACGGCGGCTTCGACTCGGACTGCAGCGAGGACGGCGAGGC
GCTCAACGGCGAACCGGAGCTAGACCTCACTAGCAAGCTGGTTCTAGTGAGCCCTACATC
AGAGCAGTATGACAGCCTGCTTCGGCAAATGTGGGAGAGGATGGACGAGGGATGCGGAGA
GACCATATATGTCATTGGGCAGGGATCAGACGGGACCGAGTACGGGCTGAGCGAAGCTGA
CATGGAAGCCTCCTACGCCACAGTGAAGAGCATGGCGGAGCAGATAGAGGCTGATGTCAT
CCTCCTGCGGGAACGGCAAGAAGCTGGGGGCCGCGTGCGTGATTACCTGGTCCGGAAACG
AGTAGGAGACAATGACTTCCTGGAAGTCAGGGTAGCAGTAGTGGGCAACGTGGATGCCGG
CAAAAGCACACTTCTGGGGGTCCTGACGCATGGGGAGCTGGACAATGGCCGAGGCTTTGC
CCGCCAGAAACTCTTCCGCCACAAACATGAAATCGAATCTGGTCGCACCAGCAGTGTGGG
CAACGACATTCTAGGCTTTGACAGTGAAGGCAACGTGGTGAACAAGCCAGACAGCCATGG
TGGCAGCCTGGAGTGGACAAAGATCTGTGAGAAGTCCACGAAGGTGATTACCTTCATCGA
CTTGGCTGGCCACGAGAAGTACCTGAAGACCACCGTCTTTGGCATGACGGGCCACTTGCC
TGACTTCTGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGAATTAGCCTAAGTTATTAAAGATGGCGGCGGAGCGGAGTCGCTCCCCGATGGACTC
GCCGGTCCCGGCCTCTATGTTCGCCCCCGAGCCTAGCTCTCCAGGGGCGGCCAAGGCCGC
GGCGGCGGCTGCCCGGCTCCACGGCGGCTTCGACTCGGACTGCAGCGAGGACGGCGAGGC
GCTCAACGGCGAACCGGAGCTAGACCTCACTAGCAAGCTGGTTCTAGTGAGCCCTACATC
AGAGCAGTATGACAGCCTGCTTCGGCAAATGTGGGAGAGGATGGACGAGGGATGCGGAGA
GACCATATATGTCATTGGGCAGGGATCAGACGGGACCGAGTACGGGCTGAGCGAAGCTGA
CATGGAAGCCTCCTACGCCACAGTGAAGAGCATGGCGGAGCAGATAGAGGCTGATGTCAT
CCTCCTGCGGGAACGGCAAGAAGCTGGGGGCCGCGTGCGTGATTACCTGGTCCGGAAACG
AGTAGGAGACAATGACTTCCTGGAAGTCAGGGTAGCAGTAGTGGGCAACGTGGATGCCGG
CAAAAGCACACTTCTGGGGGTCCTGACGCATGGGGAGCTGGACAATGGCCGAGGCTTTGC
CCGCCAGAAACTCTTCCGCCACAAACATGAAATCGAATCTGGTCGCACCAGCAGTGTGGG
CAACGACATTCTAGGCTTTGACAGTGAAGGCAACGTGGTGAACAAGCCAGACAGCCATGG
TGGCAGCCTGGAGTGGACAAAGATCTGTGAGAAGTCCACGAAGGTGATTACCTTCATCGA
CTTGGCTGGCCACGAGAAGTACCTGAAGACCACCGTCTTTGGCATGACGGGCCACTTGCC
TGACTTCTGCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55661219|ref|XP_515134.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55661219|ref|XP_515134.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               4-122, + strand, RNAz p=0.685545

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-122, + strand, RNAz p=0.685545

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC014075, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC014075, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               4-217, gnl|bosTau2|chr5 (67864964-67865177)
               

               
               4-217, gnl|Hg17|chr22 (37426439-37426652)
               

               
               4-217, gnl|Mm7|chr15 (79775017-79775230)
               


               
               497-697, gnl|bosTau2|chr23 (16100169-16099969)
               

               
               497-697, gnl|canFam2|chr12 (15081225-15081458)
               

               
               497-697, gnl|danRer3|chr22 (42165254-42165048)
               

               
               497-697, gnl|dasNov1|scaffold_9595 (80293-80060)
               

               
               497-697, gnl|echTel1|scaffold_280481 (36400-36633)
               

               
               497-697, gnl|fr1|chrUn (266649715-266649922)
               

               
               497-697, gnl|galGal2|chr3 (27167612-27167377)
               

               
               497-697, gnl|hg17|chr6 (43701069-43701302)
               

               
               497-697, gnl|Hg17|chr6 (43701275-43701075)
               

               
               497-697, gnl|loxAfr1|scaffold_89397 (28991-29224)
               

               
               497-697, gnl|mm7|chr17 (44294598-44294365)
               

               
               497-697, gnl|Mm7|chr17 (44294390-44294590)
               

               
               497-697, gnl|monDom2|scaffold_0 (197899404-197899172)
               

               
               497-697, gnl|panTro1|chr5 (44300204-44300437)
               

               
               497-697, gnl|rheMac2|chr4 (43525881-43526114)
               

               
               497-697, gnl|rn3|chr9 (10379251-10379484)
               

               
               497-697, gnl|tetNig1|chr17 (6484349-6484573)
               

               
               497-697, gnl|xenTro1|scaffold_1101 (122174-122387)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-217, gnl|bosTau2|chr5 (67864964-67865177)
               

               
               4-217, gnl|Hg17|chr22 (37426439-37426652)
               

               
               4-217, gnl|Mm7|chr15 (79775017-79775230)
               


               
               497-697, gnl|bosTau2|chr23 (16100169-16099969)
               

               
               497-697, gnl|canFam2|chr12 (15081225-15081458)
               

               
               497-697, gnl|danRer3|chr22 (42165254-42165048)
               

               
               497-697, gnl|dasNov1|scaffold_9595 (80293-80060)
               

               
               497-697, gnl|echTel1|scaffold_280481 (36400-36633)
               

               
               497-697, gnl|fr1|chrUn (266649715-266649922)
               

               
               497-697, gnl|galGal2|chr3 (27167612-27167377)
               

               
               497-697, gnl|hg17|chr6 (43701069-43701302)
               

               
               497-697, gnl|Hg17|chr6 (43701275-43701075)
               

               
               497-697, gnl|loxAfr1|scaffold_89397 (28991-29224)
               

               
               497-697, gnl|mm7|chr17 (44294598-44294365)
               

               
               497-697, gnl|Mm7|chr17 (44294390-44294590)
               

               
               497-697, gnl|monDom2|scaffold_0 (197899404-197899172)
               

               
               497-697, gnl|panTro1|chr5 (44300204-44300437)
               

               
               497-697, gnl|rheMac2|chr4 (43525881-43526114)
               

               
               497-697, gnl|rn3|chr9 (10379251-10379484)
               

               
               497-697, gnl|tetNig1|chr17 (6484349-6484573)
               

               
               497-697, gnl|xenTro1|scaffold_1101 (122174-122387)

	4-217, gnl\|bosTau2\|chr5 (67864964-67865177)
	4-217, gnl\|Hg17\|chr22 (37426439-37426652)
	4-217, gnl\|Mm7\|chr15 (79775017-79775230)

	497-697, gnl\|bosTau2\|chr23 (16100169-16099969)
	497-697, gnl\|canFam2\|chr12 (15081225-15081458)
	497-697, gnl\|danRer3\|chr22 (42165254-42165048)
	497-697, gnl\|dasNov1\|scaffold_9595 (80293-80060)
	497-697, gnl\|echTel1\|scaffold_280481 (36400-36633)
	497-697, gnl\|fr1\|chrUn (266649715-266649922)
	497-697, gnl\|galGal2\|chr3 (27167612-27167377)
	497-697, gnl\|hg17\|chr6 (43701069-43701302)
	497-697, gnl\|Hg17\|chr6 (43701275-43701075)
	497-697, gnl\|loxAfr1\|scaffold_89397 (28991-29224)
	497-697, gnl\|mm7\|chr17 (44294598-44294365)
	497-697, gnl\|Mm7\|chr17 (44294390-44294590)
	497-697, gnl\|monDom2\|scaffold_0 (197899404-197899172)
	497-697, gnl\|panTro1\|chr5 (44300204-44300437)
	497-697, gnl\|rheMac2\|chr4 (43525881-43526114)
	497-697, gnl\|rn3\|chr9 (10379251-10379484)
	497-697, gnl\|tetNig1\|chr17 (6484349-6484573)
	497-697, gnl\|xenTro1\|scaffold_1101 (122174-122387)