Ss1.1-Utr1-UTR010021F05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCAGCGTCCGGGCCGGACGCGCGCAGTGTAACTGTCGCAGTGTAGCATATGCACAGAGG CGATGAGGAGGTTTTTGTTACTCTATGCTACACAGCAAGGACAGGCAAAGGCCATAGCAG AAGAAATATGTGAAAAAGCAGATGCACATGGTTTTTCTGCAGACCTCCACTGTATCAGTG AGTCGGACAAGTACGATCTGAGGATGGAAGCGGCGCCTCTTGTGGTGGTGGTTTCCACCA CGGGCAACGGAGACCCACCCGACACAGCCCGCAAGTTCGTTAAAGCCATACAGGACAAGA CGCTGCCTGGCGACCTCCTTGCTCACCTGCGGTCTGGGTGACTCAGAGTACACGTACTTC TGTAATGGGGGGAAAATAATCGATAAACGACTGCAGGAGCTCGGGGCCCAGCATTTCTAT GACACTGGCCACGCGGATGACTGTGTTGGCTTGGAACTTGTGGTTGAGCCATGGATTAAT GGACTCTGGGCCGCCCTCGAAAAGCATTTTGCGTCACGTAGAGGAAACGAGATGAACGGC GCCGTTGCTATGGCATCTAACCCCTCCCTGAGTTCGGAGCCCGTCACACCGGAAGTATCA CACATTGACTCACAGGTCGGACTTCTGAGATTGGATGATTCGGGAAGACGGGATTCTGAG GTTTCGGAGCAAAACGTCGTGAACAGAGGTCCCTCGAGTGTTTGGATCGCAGACTTTGAG TCCTCACTTACCCAGTCAGCACCCCCACTTTCACAAGCCTCTCTGAATATTCCAGCTTCA CCACCAGAGTATTTACAGGTGGATCTGCAGGAGGCCCTGGGCCAGGAGGAGAGCCATGCA CCTGTGACTTCAGTGGATCCCGTTTTTCATGTTCCCGTTTCAAAGGCAGTTCAGCTGACG ACAAACGATGCCGTAAAAACCACTCTTCTGATAGAACTGGACATTTCAAAAACAGATTTT TCCTACCAGCCTGGAGATGCCTTCAGCGTGATCTGTCCCAACAGTGACTCTGAGGTGGAA CGCTTACTGCAAAGGCTGCAGCTCGCAGACAGGCGAGAACACCGTGTCTTCTTGAAGATT AAGGCGGACACAAAGAAGAAAGGAGCGGCCTTGCCCCAGCACGTACCCGAGGGGCGTTCT CTCCAGTTCCTTTTCACCTGGTGCCTCGAGATACGAGCAGTTCCTAAAAAGGCCTTCCTG CGAGCCCTGGCCGAGCACAGCAGCGACGGCGCCGAGAGGCGGAGGCTGCAAGAGCTGTGC AGCCGCCAGGGGACAGCCGACTACAACCGCCTGGTCAGAGACGCCCGGGCCTGCCTGCTC GACCTCCTCCTGGCCTTCCCATCCTGCCAGCCTCCGCTCAGCCTCCTGCTCGAGCATCTT CCTAAGCTCCAGCCCAGACCGTATTCATGTGCAAGGTACAAACGTTTGTTAGCATAACAC ACAGCATCTCCGAAAAATATAACAAAATTGCGACTTCCACAGCCTTAGTAGCTGCGGATT CCTGTATTGAGAAGGTAGCAGATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCAGCGTCCGGGCCGGACGCGCGCAGTGTAACTGTCGCAGTGTAGCATATGCACAGAGG CGATGAGGAGGTTTTTGTTACTCTATGCTACACAGCAAGGACAGGCAAAGGCCATAGCAG AAGAAATATGTGAAAAAGCAGATGCACATGGTTTTTCTGCAGACCTCCACTGTATCAGTG AGTCGGACAAGTACGATCTGAGGATGGAAGCGGCGCCTCTTGTGGTGGTGGTTTCCACCA CGGGCAACGGAGACCCACCCGACACAGCCCGCAAGTTCGTTAAAGCCATACAGGACAAGA CGCTGCCTGGCGACCTCCTTGCTCACCTGCGGTCTGGGTGACTCAGAGTACACGTACTTC TGTAATGGGGGGAAAATAATCGATAAACGACTGCAGGAGCTCGGGGCCCAGCATTTCTAT GACACTGGCCACGCGGATGACTGTGTTGGCTTGGAACTTGTGGTTGAGCCATGGATTAAT GGACTCTGGGCCGCCCTCGAAAAGCATTTTGCGTCACGTAGAGGAAACGAGATGAACGGC GCCGTTGCTATGGCATCTAACCCCTCCCTGAGTTCGGAGCCCGTCACACCGGAAGTATCA CACATTGACTCACAGGTCGGACTTCTGAGATTGGATGATTCGGGAAGACGGGATTCTGAG GTTTCGGAGCAAAACGTCGTGAACAGAGGTCCCTCGAGTGTTTGGATCGCAGACTTTGAG TCCTCACTTACCCAGTCAGCACCCCCACTTTCACAAGCCTCTCTGAATATTCCAGCTTCA CCACCAGAGTATTTACAGGTGGATCTGCAGGAGGCCCTGGGCCAGGAGGAGAGCCATGCA CCTGTGACTTCAGTGGATCCCGTTTTTCATGTTCCCGTTTCAAAGGCAGTTCAGCTGACG ACAAACGATGCCGTAAAAACCACTCTTCTGATAGAACTGGACATTTCAAAAACAGATTTT TCCTACCAGCCTGGAGATGCCTTCAGCGTGATCTGTCCCAACAGTGACTCTGAGGTGGAA CGCTTACTGCAAAGGCTGCAGCTCGCAGACAGGCGAGAACACCGTGTCTTCTTGAAGATT AAGGCGGACACAAAGAAGAAAGGAGCGGCCTTGCCCCAGCACGTACCCGAGGGGCGTTCT CTCCAGTTCCTTTTCACCTGGTGCCTCGAGATACGAGCAGTTCCTAAAAAGGCCTTCCTG CGAGCCCTGGCCGAGCACAGCAGCGACGGCGCCGAGAGGCGGAGGCTGCAAGAGCTGTGC AGCCGCCAGGGGACAGCCGACTACAACCGCCTGGTCAGAGACGCCCGGGCCTGCCTGCTC GACCTCCTCCTGGCCTTCCCATCCTGCCAGCCTCCGCTCAGCCTCCTGCTCGAGCATCTT CCTAAGCTCCAGCCCAGACCGTATTCATGTGCAAGGTACAAACGTTTGTTAGCATAACAC ACAGCATCTCCGAAAAATATAACAAAATTGCGACTTCCACAGCCTTAGTAGCTGCGGATT CCTGTATTGAGAAGGTAGCAGATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 63-182, - strand, RNAz p=0.932446 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 63-182, - strand, RNAz p=0.932446 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 25-191, gnl|bosTau2|chr20 (38410550-38410383) | |
| 25-191, gnl|Hg17|chr5 (7923880-7924036) | |
| 25-191, gnl|Mm7|chr13 (65490488-65490321) | |
| 331-449, gnl|bosTau2|chr20 (38405629-38405511) | |
| 331-449, gnl|canFam2|chr34 (9097918-9097778) | |
| 331-449, gnl|danRer3|chr24 (10934951-10935075) | |
| 331-449, gnl|dasNov1|scaffold_485 (103809-103671) | |
| 331-449, gnl|echTel1|scaffold_295445 (3563-3697) | |
| 331-449, gnl|fr1|chrUn (205908608-205908746) | |
| 331-449, gnl|galGal2|chr2 (79200994-79200855) | |
| 331-449, gnl|hg17|chr5 (7928354-7928494) | |
| 331-449, gnl|Hg17|chr5 (7928370-7928488) | |
| 331-449, gnl|loxAfr1|scaffold_44652 (10272-10132) | |
| 331-449, gnl|mm7|chr13 (65487494-65487354) | |
| 331-449, gnl|Mm7|chr13 (65487476-65487358) | |
| 331-449, gnl|monDom2|scaffold_4 (27192619-27192759) | |
| 331-449, gnl|oryCun1|scaffold_173855 (39228-39087) | |
| 331-449, gnl|panTro1|chr4 (8118663-8118803) | |
| 331-449, gnl|rheMac2|chr6 (7721541-7721680) | |
| 331-449, gnl|rn3|chr17 (5090626-5090766) | |
| 331-449, gnl|tetNig1|chr6 (1483007-1483135) | |
| 451-826, gnl|bosTau2|chr20 (38403099-38402727) | |
| 451-826, gnl|canFam2|chr34 (9095278-9094994) | |
| 451-826, gnl|dasNov1|scaffold_485 (101216-100937) | |
| 451-826, gnl|echTel1|scaffold_295445 (4529-4806) | |
| 451-826, gnl|galGal2|chr2 (79199877-79199625) | |
| 451-826, gnl|hg17|chr5 (7931048-7931327) | |
| 451-826, gnl|Hg17|chr5 (7931058-7931436) | |
| 451-826, gnl|loxAfr1|scaffold_44652 (8021-7744) | |
| 451-826, gnl|mm7|chr13 (65485172-65484898) | |
| 451-826, gnl|Mm7|chr13 (65485159-65484787) | |
| 451-826, gnl|monDom2|scaffold_4 (27194310-27194593) | |
| 451-826, gnl|panTro1|chr4 (8121353-8121632) | |
| 451-826, gnl|rheMac2|chr6 (7724246-7724525) | |
| 451-826, gnl|rn3|chr17 (5092968-5093248) | |
| 949-1113, gnl|bosTau2|chr20 (38395137-38394973) | |
| 949-1113, gnl|Hg17|chr5 (7938814-7938979) | |
| 949-1113, gnl|Mm7|chr13 (65480994-65480839) | |
| 1190-1372, gnl|bosTau2|chr20 (38391392-38391210) | |
| 1190-1372, gnl|Hg17|chr5 (7942206-7942388) | |
| 1190-1372, gnl|Mm7|chr13 (65478725-65478543) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 25-191, gnl|bosTau2|chr20 (38410550-38410383) | |
| 25-191, gnl|Hg17|chr5 (7923880-7924036) | |
| 25-191, gnl|Mm7|chr13 (65490488-65490321) | |
| 331-449, gnl|bosTau2|chr20 (38405629-38405511) | |
| 331-449, gnl|canFam2|chr34 (9097918-9097778) | |
| 331-449, gnl|danRer3|chr24 (10934951-10935075) | |
| 331-449, gnl|dasNov1|scaffold_485 (103809-103671) | |
| 331-449, gnl|echTel1|scaffold_295445 (3563-3697) | |
| 331-449, gnl|fr1|chrUn (205908608-205908746) | |
| 331-449, gnl|galGal2|chr2 (79200994-79200855) | |
| 331-449, gnl|hg17|chr5 (7928354-7928494) | |
| 331-449, gnl|Hg17|chr5 (7928370-7928488) | |
| 331-449, gnl|loxAfr1|scaffold_44652 (10272-10132) | |
| 331-449, gnl|mm7|chr13 (65487494-65487354) | |
| 331-449, gnl|Mm7|chr13 (65487476-65487358) | |
| 331-449, gnl|monDom2|scaffold_4 (27192619-27192759) | |
| 331-449, gnl|oryCun1|scaffold_173855 (39228-39087) | |
| 331-449, gnl|panTro1|chr4 (8118663-8118803) | |
| 331-449, gnl|rheMac2|chr6 (7721541-7721680) | |
| 331-449, gnl|rn3|chr17 (5090626-5090766) | |
| 331-449, gnl|tetNig1|chr6 (1483007-1483135) | |
| 451-826, gnl|bosTau2|chr20 (38403099-38402727) | |
| 451-826, gnl|canFam2|chr34 (9095278-9094994) | |
| 451-826, gnl|dasNov1|scaffold_485 (101216-100937) | |
| 451-826, gnl|echTel1|scaffold_295445 (4529-4806) | |
| 451-826, gnl|galGal2|chr2 (79199877-79199625) | |
| 451-826, gnl|hg17|chr5 (7931048-7931327) | |
| 451-826, gnl|Hg17|chr5 (7931058-7931436) | |
| 451-826, gnl|loxAfr1|scaffold_44652 (8021-7744) | |
| 451-826, gnl|mm7|chr13 (65485172-65484898) | |
| 451-826, gnl|Mm7|chr13 (65485159-65484787) | |
| 451-826, gnl|monDom2|scaffold_4 (27194310-27194593) | |
| 451-826, gnl|panTro1|chr4 (8121353-8121632) | |
| 451-826, gnl|rheMac2|chr6 (7724246-7724525) | |
| 451-826, gnl|rn3|chr17 (5092968-5093248) | |
| 949-1113, gnl|bosTau2|chr20 (38395137-38394973) | |
| 949-1113, gnl|Hg17|chr5 (7938814-7938979) | |
| 949-1113, gnl|Mm7|chr13 (65480994-65480839) | |
| 1190-1372, gnl|bosTau2|chr20 (38391392-38391210) | |
| 1190-1372, gnl|Hg17|chr5 (7942206-7942388) | |
| 1190-1372, gnl|Mm7|chr13 (65478725-65478543) |