Non-Coding RNA Search

Ss1.1-Utr1-UTR010021H07.5

Sequence:


               
               ACTTTAAACGCCTTACCGACTATAAAGGGCGAGAAAGGAAAGATCTCTTCCCTCAGACTT
CTCTTTTCCCAGGTGGGCCAGTTCTTGGCCTCGCGGGCTTACGTCATGGGAGGAATGCGG
TGACGCGACGCTGCTCTTGTGACGTCGACGACGAAGGCCGGGCTCCCGGTTCGATGATGT
CATCGGGTCCTTTTTCCTCCCCCTGCTGCCCTGCGATGGAAATGGCAAGGATGGAGGAAC
AAGTTAAATGACATCAGGAAACAGCTGTCAAACCCCAAGGGTGGAGTATGCTGGAGGACA
ACTGTCTCTTCGATGAATCAGTCATGGCAAAAGGGAATGGGGAGTATTCTAGGGCAGGTG
ACATCATTGACATTTGGGGCCAAACTGCATTGTAGGGTGCTGAGCAGCATCCCTGGCTGC
CACTCACTACATGCCAGGAGCACACAGCCCCCACCCCTCACCAGATGTGACAACCAAAGA
TGTTTCCAGACACAGCCAAATGTCCTTGGAGATATTGCCCTAGAGGATGGCAGAGCAACT
GGCAGGAGGACCTGGGATCCCCAGGCCAAAAGAGACAAACATTCTCTCTTGTTTAAGCCA
ATTATTGGGTCCTCATTAAATTGAGAGAACTATGACTTTGGTAATCCTGTTCCAAGTTTT
TATATTCACTGAAAGTTTCACACCAGATAAGAATGCTCATTGAAGCAGAAAGGCGATGTG
GGTGTCCATCCCTAGGGGACCAGAAAGATGAAATAAGGAAGGCTGCAGAATACAAAACAC
TAAGCCAACAGTGAAAGCAACAAAGTAGCTCTTAAAAAAAAATCTGATGGGGAGATCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTTAAACGCCTTACCGACTATAAAGGGCGAGAAAGGAAAGATCTCTTCCCTCAGACTT
CTCTTTTCCCAGGTGGGCCAGTTCTTGGCCTCGCGGGCTTACGTCATGGGAGGAATGCGG
TGACGCGACGCTGCTCTTGTGACGTCGACGACGAAGGCCGGGCTCCCGGTTCGATGATGT
CATCGGGTCCTTTTTCCTCCCCCTGCTGCCCTGCGATGGAAATGGCAAGGATGGAGGAAC
AAGTTAAATGACATCAGGAAACAGCTGTCAAACCCCAAGGGTGGAGTATGCTGGAGGACA
ACTGTCTCTTCGATGAATCAGTCATGGCAAAAGGGAATGGGGAGTATTCTAGGGCAGGTG
ACATCATTGACATTTGGGGCCAAACTGCATTGTAGGGTGCTGAGCAGCATCCCTGGCTGC
CACTCACTACATGCCAGGAGCACACAGCCCCCACCCCTCACCAGATGTGACAACCAAAGA
TGTTTCCAGACACAGCCAAATGTCCTTGGAGATATTGCCCTAGAGGATGGCAGAGCAACT
GGCAGGAGGACCTGGGATCCCCAGGCCAAAAGAGACAAACATTCTCTCTTGTTTAAGCCA
ATTATTGGGTCCTCATTAAATTGAGAGAACTATGACTTTGGTAATCCTGTTCCAAGTTTT
TATATTCACTGAAAGTTTCACACCAGATAAGAATGCTCATTGAAGCAGAAAGGCGATGTG
GGTGTCCATCCCTAGGGGACCAGAAAGATGAAATAAGGAAGGCTGCAGAATACAAAACAC
TAAGCCAACAGTGAAAGCAACAAAGTAGCTCTTAAAAAAAAATCTGATGGGGAGATCCTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               77-189, - strand, RNAz p=0.593436

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-189, - strand, RNAz p=0.593436

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               74-175, + strand, RNAmicro p=0.999997

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               74-175, + strand, RNAmicro p=0.999997

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-203, gnl|bosTau2|chr7 (7806437-7806232)
               

               
               1-203, gnl|canFam2|chr20 (51489986-51489722)
               

               
               1-203, gnl|echTel1|scaffold_261056 (986-1265)
               

               
               1-203, gnl|hg17|chr19 (13978532-13978800)
               

               
               1-203, gnl|Hg17|chr19 (13978546-13978748)
               

               
               1-203, gnl|mm7|chr8 (82649032-82648838)
               

               
               1-203, gnl|monDom2|scaffold_159 (1253258-1253481)
               

               
               1-203, gnl|oryCun1|scaffold_182206 (6671-6900)
               

               
               1-203, gnl|panTro1|chr20 (14609577-14609845)
               

               
               1-203, gnl|rheMac2|chr19 (13698346-13698615)
               

               
               1-203, gnl|rn3|chr19 (25781902-25782096)
               


               
               647-817, gnl|bosTau2|chr7 (7801190-7801018)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-203, gnl|bosTau2|chr7 (7806437-7806232)
               

               
               1-203, gnl|canFam2|chr20 (51489986-51489722)
               

               
               1-203, gnl|echTel1|scaffold_261056 (986-1265)
               

               
               1-203, gnl|hg17|chr19 (13978532-13978800)
               

               
               1-203, gnl|Hg17|chr19 (13978546-13978748)
               

               
               1-203, gnl|mm7|chr8 (82649032-82648838)
               

               
               1-203, gnl|monDom2|scaffold_159 (1253258-1253481)
               

               
               1-203, gnl|oryCun1|scaffold_182206 (6671-6900)
               

               
               1-203, gnl|panTro1|chr20 (14609577-14609845)
               

               
               1-203, gnl|rheMac2|chr19 (13698346-13698615)
               

               
               1-203, gnl|rn3|chr19 (25781902-25782096)
               


               
               647-817, gnl|bosTau2|chr7 (7801190-7801018)

	1-203, gnl\|bosTau2\|chr7 (7806437-7806232)
	1-203, gnl\|canFam2\|chr20 (51489986-51489722)
	1-203, gnl\|echTel1\|scaffold_261056 (986-1265)
	1-203, gnl\|hg17\|chr19 (13978532-13978800)
	1-203, gnl\|Hg17\|chr19 (13978546-13978748)
	1-203, gnl\|mm7\|chr8 (82649032-82648838)
	1-203, gnl\|monDom2\|scaffold_159 (1253258-1253481)
	1-203, gnl\|oryCun1\|scaffold_182206 (6671-6900)
	1-203, gnl\|panTro1\|chr20 (14609577-14609845)
	1-203, gnl\|rheMac2\|chr19 (13698346-13698615)
	1-203, gnl\|rn3\|chr19 (25781902-25782096)

	647-817, gnl\|bosTau2\|chr7 (7801190-7801018)