Ss1.1-Utr1-UTR010022H09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGCGTGTCGCAGCGTCCTGGAGCAGCTGCACCGGGCGGTCACGTCGCCCCAGCCGCCCC CGCTGCCCCTGGAGAGCTACATATACAACGTCCTCTACGAGGTGCCGCTCCCGCCCCCCG GCCGCTCCTTGAAGTTTTCCGGGGTCTACGCGCCCATCGTCTGCCAGAGACCAAGCACCA GCGAGCTGCCCCTGTTCGACTTTCCTGTCAGAGAGGTCTTCGAGCTGCTGGGGGTGGAGA ACGTGTTTCAGCTCTTCACTTGCGCCCTGCTGGAGTTTCAGATCCTGCTCTACTCGCAGC ACTACCAGCGGCTGATGGCGGTGGCGGAGACCATCACGGCCCTCATGTTTCCTTTCCAGT GGCAGCACGTCTATGTCCCCATCCTCCCGGCGTCTCTCCTCCATTTCCTAGACGCCCCTG TGCCGTACCTGATGGGCTTGCACTCCAATGGCCTGGATGACCGCTCAAAGCTGGAGCTGC CTCAAGAGGCCAACCTCTGCTTTGTGGACATTGACAACCACTTCATTGAGCTGCCCGAGG ACTTGCCTCAGTTTCCCAACAAATTGGAGTTTGTCCAGGAGGTGTCGGAGATCCTCATGG CCTTTGGCCTCCCTCCCGAAGGAAACCTTCCCTGCAGCGAGAGCGCCGCCAAGCTGAAGA GGCTCCGGGCCTCCGAGCTCGTCTCCGACAAGAGGAACGGGAACGTCGCAGGCTCCCCTT TGCAACCCTACGAGCTCCTCAAGGAGAATGAAACCATTGCCCGCCTTCAAGCCTTGGTCA GGAGGACTGGGGTGAGCCTGGAGAAGCTGGAAGTGCGCGAAGACCCCAGCAGCAACAAGA GTCTCAAGGTCCAGTGCGACGAGGAGGAGCTCAGGATTTACCAGCTGAACATTCAGATCC GGGAGGTGTTTGCAAATCGTTTCACTCAGATGTTTGCCGATTACGAGGTGTTTGTCATTC AGCCCAGCCAGGATAAGGAGTCCTGGTTTACCAACAGGGAGCAGATGCAAAACTTTGATA AAGCGACTTTTCTGTCAGATCAGCCGGAGCCCTACCTGCCCTTCCTCTCGAGATTCCTGG AGACCCAGATGTTTGCTTCCTTCATCGACAACAAAATCATGTGTCACGACGATGACGATA AAGATCCTGTGCTCCGGGTGTTTGACGCCCGTGTCGACAAGATCAGGCTGTTGAATGTTC GGACCCCCACCCTGCGCACGTCCATGTACCAGAAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGCGTGTCGCAGCGTCCTGGAGCAGCTGCACCGGGCGGTCACGTCGCCCCAGCCGCCCC CGCTGCCCCTGGAGAGCTACATATACAACGTCCTCTACGAGGTGCCGCTCCCGCCCCCCG GCCGCTCCTTGAAGTTTTCCGGGGTCTACGCGCCCATCGTCTGCCAGAGACCAAGCACCA GCGAGCTGCCCCTGTTCGACTTTCCTGTCAGAGAGGTCTTCGAGCTGCTGGGGGTGGAGA ACGTGTTTCAGCTCTTCACTTGCGCCCTGCTGGAGTTTCAGATCCTGCTCTACTCGCAGC ACTACCAGCGGCTGATGGCGGTGGCGGAGACCATCACGGCCCTCATGTTTCCTTTCCAGT GGCAGCACGTCTATGTCCCCATCCTCCCGGCGTCTCTCCTCCATTTCCTAGACGCCCCTG TGCCGTACCTGATGGGCTTGCACTCCAATGGCCTGGATGACCGCTCAAAGCTGGAGCTGC CTCAAGAGGCCAACCTCTGCTTTGTGGACATTGACAACCACTTCATTGAGCTGCCCGAGG ACTTGCCTCAGTTTCCCAACAAATTGGAGTTTGTCCAGGAGGTGTCGGAGATCCTCATGG CCTTTGGCCTCCCTCCCGAAGGAAACCTTCCCTGCAGCGAGAGCGCCGCCAAGCTGAAGA GGCTCCGGGCCTCCGAGCTCGTCTCCGACAAGAGGAACGGGAACGTCGCAGGCTCCCCTT TGCAACCCTACGAGCTCCTCAAGGAGAATGAAACCATTGCCCGCCTTCAAGCCTTGGTCA GGAGGACTGGGGTGAGCCTGGAGAAGCTGGAAGTGCGCGAAGACCCCAGCAGCAACAAGA GTCTCAAGGTCCAGTGCGACGAGGAGGAGCTCAGGATTTACCAGCTGAACATTCAGATCC GGGAGGTGTTTGCAAATCGTTTCACTCAGATGTTTGCCGATTACGAGGTGTTTGTCATTC AGCCCAGCCAGGATAAGGAGTCCTGGTTTACCAACAGGGAGCAGATGCAAAACTTTGATA AAGCGACTTTTCTGTCAGATCAGCCGGAGCCCTACCTGCCCTTCCTCTCGAGATTCCTGG AGACCCAGATGTTTGCTTCCTTCATCGACAACAAAATCATGTGTCACGACGATGACGATA AAGATCCTGTGCTCCGGGTGTTTGACGCCCGTGTCGACAAGATCAGGCTGTTGAATGTTC GGACCCCCACCCTGCGCACGTCCATGTACCAGAAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 532-691, - strand, RNAz p=0.827559 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 532-691, - strand, RNAz p=0.827559 |
| Aligned organism(s): 75 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
| 3-300, gnl|bosTau2|chr15 (30697251-30696954) | |
| 3-300, gnl|canFam2|chr21 (35716596-35716816) | |
| 3-300, gnl|danRer3|chr22 (34272749-34272969) | |
| 3-300, gnl|dasNov1|scaffold_26252 (3343-3122) | |
| 3-300, gnl|echTel1|scaffold_228972 (521-302) | |
| 3-300, gnl|fr1|chrUn (241141414-241141634) | |
| 3-300, gnl|galGal2|chr5 (6961399-6961179) | |
| 3-300, gnl|hg17|chr11 (9181777-9181997) | |
| 3-300, gnl|Hg17|chr11 (9182080-9181783) | |
| 3-300, gnl|loxAfr1|scaffold_25475 (20368-20594) | |
| 3-300, gnl|mm7|chr7 (105848878-105849098) | |
| 3-300, gnl|Mm7|chr7 (105849181-105848884) | |
| 3-300, gnl|monDom2|scaffold_10 (59419214-59419434) | |
| 3-300, gnl|oryCun1|scaffold_134679 (6372-6592) | |
| 3-300, gnl|panTro1|chr9_random (41563544-41563764) | |
| 3-300, gnl|rheMac2|chr14 (62755203-62754983) | |
| 3-300, gnl|rn3|chr1 (167671423-167671643) | |
| 3-300, gnl|tetNig1|chr5 (6414075-6413856) | |
| 3-300, gnl|xenTro1|scaffold_1410 (93611-93831) | |
| 303-489, gnl|bosTau2|chr15 (30691866-30691680) | |
| 303-489, gnl|canFam2|chr21 (35706177-35706396) | |
| 303-489, gnl|danRer3|chr22 (34262349-34262545) | |
| 303-489, gnl|dasNov1|scaffold_88937 (6793-6991) | |
| 303-489, gnl|echTel1|scaffold_322708 (537-317) | |
| 303-489, gnl|fr1|chrUn (241139179-241139372) | |
| 303-489, gnl|galGal2|chr5 (6968139-6967943) | |
| 303-489, gnl|hg17|chr11 (9171599-9171808) | |
| 303-489, gnl|Hg17|chr11 (9171802-9171616) | |
| 303-489, gnl|loxAfr1|scaffold_25475 (11307-11530) | |
| 303-489, gnl|mm7|chr7 (105842076-105842289) | |
| 303-489, gnl|Mm7|chr7 (105842283-105842097) | |
| 303-489, gnl|monDom2|scaffold_10 (59410269-59410483) | |
| 303-489, gnl|oryCun1|scaffold_191861 (4970-5176) | |
| 303-489, gnl|panTro1|chr9_random (41553371-41553582) | |
| 303-489, gnl|rheMac2|chr14 (62765899-62765690) | |
| 303-489, gnl|rn3|chr1 (167665339-167665553) | |
| 303-489, gnl|tetNig1|chr5 (6416394-6416202) | |
| 303-489, gnl|xenTro1|scaffold_1410 (93072-93268) | |
| 492-806, gnl|bosTau2|chr15 (30682150-30681836) | |
| 492-806, gnl|canFam2|chr21 (35697427-35697753) | |
| 492-806, gnl|danRer3|chr22 (34258124-34258442) | |
| 492-806, gnl|dasNov1|scaffold_17318 (10902-10576) | |
| 492-806, gnl|echTel1|scaffold_237192 (6774-7100) | |
| 492-806, gnl|fr1|chrUn (241138792-241139103) | |
| 492-806, gnl|galGal2|chr5 (6977932-6977607) | |
| 492-806, gnl|hg17|chr11 (9158881-9159206) | |
| 492-806, gnl|Hg17|chr11 (9159204-9158890) | |
| 492-806, gnl|mm7|chr7 (105836455-105836781) | |
| 492-806, gnl|Mm7|chr7 (105836779-105836465) | |
| 492-806, gnl|monDom2|scaffold_10 (59400357-59400677) | |
| 492-806, gnl|oryCun1|scaffold_132274 (4303-3970) | |
| 492-806, gnl|panTro1|chr9_random (41540669-41540994) | |
| 492-806, gnl|rheMac2|chr14 (62776700-62776375) | |
| 492-806, gnl|rn3|chr1 (167659228-167659554) | |
| 492-806, gnl|tetNig1|chr5 (6416783-6416469) | |
| 492-806, gnl|xenTro1|scaffold_1410 (90054-90379) | |
| 1027-1236, gnl|bosTau2|chr15 (30680022-30679813) | |
| 1027-1236, gnl|canFam2|chr21 (35695258-35695517) | |
| 1027-1236, gnl|danRer3|chr22 (34246769-34247036) | |
| 1027-1236, gnl|dasNov1|scaffold_13953 (4955-5185) | |
| 1027-1236, gnl|echTel1|scaffold_237192 (3190-3449) | |
| 1027-1236, gnl|fr1|chrUn (241138141-241138398) | |
| 1027-1236, gnl|galGal2|chr5 (6980085-6979828) | |
| 1027-1236, gnl|hg17|chr11 (9156250-9156509) | |
| 1027-1236, gnl|Hg17|chr11 (9156485-9156276) | |
| 1027-1236, gnl|loxAfr1|scaffold_190657 (466-207) | |
| 1027-1236, gnl|mm7|chr7 (105833860-105834119) | |
| 1027-1236, gnl|Mm7|chr7 (105834095-105833886) | |
| 1027-1236, gnl|monDom2|scaffold_10 (59396370-59396637) | |
| 1027-1236, gnl|oryCun1|scaffold_195071 (21305-21542) | |
| 1027-1236, gnl|panTro1|chr9_random (41538037-41538296) | |
| 1027-1236, gnl|rheMac2|chr14 (62779390-62779131) | |
| 1027-1236, gnl|rn3|chr1 (167656872-167657131) | |
| 1027-1236, gnl|tetNig1|chr5 (6417477-6417221) | |
| 1027-1236, gnl|xenTro1|scaffold_1410 (85647-85906) |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-300, gnl|bosTau2|chr15 (30697251-30696954) | |
| 3-300, gnl|canFam2|chr21 (35716596-35716816) | |
| 3-300, gnl|danRer3|chr22 (34272749-34272969) | |
| 3-300, gnl|dasNov1|scaffold_26252 (3343-3122) | |
| 3-300, gnl|echTel1|scaffold_228972 (521-302) | |
| 3-300, gnl|fr1|chrUn (241141414-241141634) | |
| 3-300, gnl|galGal2|chr5 (6961399-6961179) | |
| 3-300, gnl|hg17|chr11 (9181777-9181997) | |
| 3-300, gnl|Hg17|chr11 (9182080-9181783) | |
| 3-300, gnl|loxAfr1|scaffold_25475 (20368-20594) | |
| 3-300, gnl|mm7|chr7 (105848878-105849098) | |
| 3-300, gnl|Mm7|chr7 (105849181-105848884) | |
| 3-300, gnl|monDom2|scaffold_10 (59419214-59419434) | |
| 3-300, gnl|oryCun1|scaffold_134679 (6372-6592) | |
| 3-300, gnl|panTro1|chr9_random (41563544-41563764) | |
| 3-300, gnl|rheMac2|chr14 (62755203-62754983) | |
| 3-300, gnl|rn3|chr1 (167671423-167671643) | |
| 3-300, gnl|tetNig1|chr5 (6414075-6413856) | |
| 3-300, gnl|xenTro1|scaffold_1410 (93611-93831) | |
| 303-489, gnl|bosTau2|chr15 (30691866-30691680) | |
| 303-489, gnl|canFam2|chr21 (35706177-35706396) | |
| 303-489, gnl|danRer3|chr22 (34262349-34262545) | |
| 303-489, gnl|dasNov1|scaffold_88937 (6793-6991) | |
| 303-489, gnl|echTel1|scaffold_322708 (537-317) | |
| 303-489, gnl|fr1|chrUn (241139179-241139372) | |
| 303-489, gnl|galGal2|chr5 (6968139-6967943) | |
| 303-489, gnl|hg17|chr11 (9171599-9171808) | |
| 303-489, gnl|Hg17|chr11 (9171802-9171616) | |
| 303-489, gnl|loxAfr1|scaffold_25475 (11307-11530) | |
| 303-489, gnl|mm7|chr7 (105842076-105842289) | |
| 303-489, gnl|Mm7|chr7 (105842283-105842097) | |
| 303-489, gnl|monDom2|scaffold_10 (59410269-59410483) | |
| 303-489, gnl|oryCun1|scaffold_191861 (4970-5176) | |
| 303-489, gnl|panTro1|chr9_random (41553371-41553582) | |
| 303-489, gnl|rheMac2|chr14 (62765899-62765690) | |
| 303-489, gnl|rn3|chr1 (167665339-167665553) | |
| 303-489, gnl|tetNig1|chr5 (6416394-6416202) | |
| 303-489, gnl|xenTro1|scaffold_1410 (93072-93268) | |
| 492-806, gnl|bosTau2|chr15 (30682150-30681836) | |
| 492-806, gnl|canFam2|chr21 (35697427-35697753) | |
| 492-806, gnl|danRer3|chr22 (34258124-34258442) | |
| 492-806, gnl|dasNov1|scaffold_17318 (10902-10576) | |
| 492-806, gnl|echTel1|scaffold_237192 (6774-7100) | |
| 492-806, gnl|fr1|chrUn (241138792-241139103) | |
| 492-806, gnl|galGal2|chr5 (6977932-6977607) | |
| 492-806, gnl|hg17|chr11 (9158881-9159206) | |
| 492-806, gnl|Hg17|chr11 (9159204-9158890) | |
| 492-806, gnl|mm7|chr7 (105836455-105836781) | |
| 492-806, gnl|Mm7|chr7 (105836779-105836465) | |
| 492-806, gnl|monDom2|scaffold_10 (59400357-59400677) | |
| 492-806, gnl|oryCun1|scaffold_132274 (4303-3970) | |
| 492-806, gnl|panTro1|chr9_random (41540669-41540994) | |
| 492-806, gnl|rheMac2|chr14 (62776700-62776375) | |
| 492-806, gnl|rn3|chr1 (167659228-167659554) | |
| 492-806, gnl|tetNig1|chr5 (6416783-6416469) | |
| 492-806, gnl|xenTro1|scaffold_1410 (90054-90379) | |
| 1027-1236, gnl|bosTau2|chr15 (30680022-30679813) | |
| 1027-1236, gnl|canFam2|chr21 (35695258-35695517) | |
| 1027-1236, gnl|danRer3|chr22 (34246769-34247036) | |
| 1027-1236, gnl|dasNov1|scaffold_13953 (4955-5185) | |
| 1027-1236, gnl|echTel1|scaffold_237192 (3190-3449) | |
| 1027-1236, gnl|fr1|chrUn (241138141-241138398) | |
| 1027-1236, gnl|galGal2|chr5 (6980085-6979828) | |
| 1027-1236, gnl|hg17|chr11 (9156250-9156509) | |
| 1027-1236, gnl|Hg17|chr11 (9156485-9156276) | |
| 1027-1236, gnl|loxAfr1|scaffold_190657 (466-207) | |
| 1027-1236, gnl|mm7|chr7 (105833860-105834119) | |
| 1027-1236, gnl|Mm7|chr7 (105834095-105833886) | |
| 1027-1236, gnl|monDom2|scaffold_10 (59396370-59396637) | |
| 1027-1236, gnl|oryCun1|scaffold_195071 (21305-21542) | |
| 1027-1236, gnl|panTro1|chr9_random (41538037-41538296) | |
| 1027-1236, gnl|rheMac2|chr14 (62779390-62779131) | |
| 1027-1236, gnl|rn3|chr1 (167656872-167657131) | |
| 1027-1236, gnl|tetNig1|chr5 (6417477-6417221) | |
| 1027-1236, gnl|xenTro1|scaffold_1410 (85647-85906) |