Non-Coding RNA Search

Ss1.1-Utr1-UTR010023F12.5

Sequence:


               
               TTTATGATTTTTCTTGAGATAACAGGTTTCTCTGATTTTTTTTTTTTCTAAATCATCTTT
TAACTTTTGCAATGTAAAGCTGATTCTTCCTTGCCATTTTTGTTTAGATAGTTATTGAAT
GTGAAGTTTCAGCTTTGTAACTTTCTAGTTTACATTAATTAGCTGTAAAGGTTGGTCATT
TCATCAATGCCCATTTGGATTTCGTATCTATATTTATCTAATAGGTTTAAGTTAAATACA
AAAATGAGCCACTAATGAAATTGTATCAGATTGCAGATTTTCAAATACATGTAGGGGATA
GCTCTTTGCCTTAGAGTGGAAACCATAGTTTCAGAAGCACATTCTTTTGAACATTGTCTA
GAGTTACTGGCCCGTAGAACTTGGTAGTAGTGGCTACTGCTGACAGACATGTTCAGAAGG
ACCACCCAAGGTTTTTGTTTCTTAAAGCCAAGGAACAGGCGTAGACTGGTGCCAAGGCTC
CCCTTACTTAAAGTGGAGAATGACACAGAGGTCTATGGAAATTGCTTCAGAGGATGGTCC
TGCTGAAATAAATAAATCGTGTGCCTCTCCACAAGCCTCTAGGAGAAAAGATGATGATTG
TTTTGAAGAAACTGAGTCTGCTGAACTCTAAATGGAGAAAACTGACCTTTCAGTTTATTT
TATAAACTTAAAGCAGCTATGTAATTGCTGACTCATTTAAAACATTTTGTCAATAAGTTA
TGTCTAAGAACCAACTGAAACTCTCTAGGGTGGTAGTAAGTTGACTTTCACATAAAGACT
AGCTAACCCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATGATTTTTCTTGAGATAACAGGTTTCTCTGATTTTTTTTTTTTCTAAATCATCTTT
TAACTTTTGCAATGTAAAGCTGATTCTTCCTTGCCATTTTTGTTTAGATAGTTATTGAAT
GTGAAGTTTCAGCTTTGTAACTTTCTAGTTTACATTAATTAGCTGTAAAGGTTGGTCATT
TCATCAATGCCCATTTGGATTTCGTATCTATATTTATCTAATAGGTTTAAGTTAAATACA
AAAATGAGCCACTAATGAAATTGTATCAGATTGCAGATTTTCAAATACATGTAGGGGATA
GCTCTTTGCCTTAGAGTGGAAACCATAGTTTCAGAAGCACATTCTTTTGAACATTGTCTA
GAGTTACTGGCCCGTAGAACTTGGTAGTAGTGGCTACTGCTGACAGACATGTTCAGAAGG
ACCACCCAAGGTTTTTGTTTCTTAAAGCCAAGGAACAGGCGTAGACTGGTGCCAAGGCTC
CCCTTACTTAAAGTGGAGAATGACACAGAGGTCTATGGAAATTGCTTCAGAGGATGGTCC
TGCTGAAATAAATAAATCGTGTGCCTCTCCACAAGCCTCTAGGAGAAAAGATGATGATTG
TTTTGAAGAAACTGAGTCTGCTGAACTCTAAATGGAGAAAACTGACCTTTCAGTTTATTT
TATAAACTTAAAGCAGCTATGTAATTGCTGACTCATTTAAAACATTTTGTCAATAAGTTA
TGTCTAAGAACCAACTGAAACTCTCTAGGGTGGTAGTAAGTTGACTTTCACATAAAGACT
AGCTAACCCTCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               482-586, - strand, RNAz p=0.633494
               

               
               488-605, + strand, RNAz p=0.559879

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               482-586, - strand, RNAz p=0.633494
               

               
               488-605, + strand, RNAz p=0.559879

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               156-709, gnl|bosTau2|chr26 (13365646-13366195)
               

               
               156-709, gnl|canFam2|chr28 (16644236-16644715)
               

               
               156-709, gnl|hg17|chr10 (102707853-102708338)
               

               
               156-709, gnl|Hg17|chr10 (102707957-102708525)
               

               
               156-709, gnl|loxAfr1|scaffold_10441 (14703-14214)
               

               
               156-709, gnl|monDom2|scaffold_14 (62726363-62725942)
               

               
               156-709, gnl|oryCun1|scaffold_194820 (17989-18458)
               

               
               156-709, gnl|panTro1|chr8 (104454160-104454645)
               

               
               156-709, gnl|rheMac2|chr9 (100568870-100569358)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               156-709, gnl|bosTau2|chr26 (13365646-13366195)
               

               
               156-709, gnl|canFam2|chr28 (16644236-16644715)
               

               
               156-709, gnl|hg17|chr10 (102707853-102708338)
               

               
               156-709, gnl|Hg17|chr10 (102707957-102708525)
               

               
               156-709, gnl|loxAfr1|scaffold_10441 (14703-14214)
               

               
               156-709, gnl|monDom2|scaffold_14 (62726363-62725942)
               

               
               156-709, gnl|oryCun1|scaffold_194820 (17989-18458)
               

               
               156-709, gnl|panTro1|chr8 (104454160-104454645)
               

               
               156-709, gnl|rheMac2|chr9 (100568870-100569358)

	482-586, - strand, RNAz p=0.633494
	488-605, + strand, RNAz p=0.559879

	156-709, gnl\|bosTau2\|chr26 (13365646-13366195)
	156-709, gnl\|canFam2\|chr28 (16644236-16644715)
	156-709, gnl\|hg17\|chr10 (102707853-102708338)
	156-709, gnl\|Hg17\|chr10 (102707957-102708525)
	156-709, gnl\|loxAfr1\|scaffold_10441 (14703-14214)
	156-709, gnl\|monDom2\|scaffold_14 (62726363-62725942)
	156-709, gnl\|oryCun1\|scaffold_194820 (17989-18458)
	156-709, gnl\|panTro1\|chr8 (104454160-104454645)
	156-709, gnl\|rheMac2\|chr9 (100568870-100569358)