Non-Coding RNA Search

Ss1.1-Utr1-UTR010028C01.5

Sequence:


               
               ATTTCAGGTCAACTGAGAACATAAAGAAAGATGTCAAGAGCTGTGTAATATTGATAACAC
TGCAGAAAACTACTCTCTATCCCAGCACTTCAGGTTTTGTAATAAATGGTGCAGCTGGAC
ACCATGGTAAAAGATTTACCTTTTACCATTACTTTTATTACAGGTCACTGCTCAAGAATG
TAGGATCTGTTTTAAGCACACTTTCTTTCAAGAGGAATTTCAATATAACTGTGTTCAGTT
CTTACAGACCTTGGGTATCTTCTCTTCTTCAGCTATTAATTGGCAAGTATGGAGAGCTAA
AGCTTACCTGCAGCTCACTTGTTACTGAAAAATTGATGGAAAGTTCATGTATCATGGCTA
ATACCCCGAAGGTAGGGCCTTATATTGGACTCTGGTACTCAATTTCATCCTGAAAATAAG
CCTTGCCAATATAAACCTTTGTAATAAGTGCTAAGGAGATGCTGGCATAGAGCTCCAGCT
GAATAAGAGTCAAACTAGAGTGAGAGGAAAATAAAATGCCTGTGGCAGAAATATATTTTA
TAGATGTTGTTGGTGGGTCAGATGATATTGCTTGATTAGTACAAAGTTCAAAGTTCAGGG
ATAGAGATTGATGTGAAAGGGCTTTGTTAAATATGCTATCTAACATAGGCTGAATGGACA
CAAAAACAAGACCTACATATTTGCTGTTTATAAGAGACCCACTTCAGATCAAGAGACACA
TACAGGAGTTCCCGTCATGGCGCAGTGGTTAACGAATCCAACTAGGAACCATGAGGTTTC
GGGTTCGGTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTCAGGTCAACTGAGAACATAAAGAAAGATGTCAAGAGCTGTGTAATATTGATAACAC
TGCAGAAAACTACTCTCTATCCCAGCACTTCAGGTTTTGTAATAAATGGTGCAGCTGGAC
ACCATGGTAAAAGATTTACCTTTTACCATTACTTTTATTACAGGTCACTGCTCAAGAATG
TAGGATCTGTTTTAAGCACACTTTCTTTCAAGAGGAATTTCAATATAACTGTGTTCAGTT
CTTACAGACCTTGGGTATCTTCTCTTCTTCAGCTATTAATTGGCAAGTATGGAGAGCTAA
AGCTTACCTGCAGCTCACTTGTTACTGAAAAATTGATGGAAAGTTCATGTATCATGGCTA
ATACCCCGAAGGTAGGGCCTTATATTGGACTCTGGTACTCAATTTCATCCTGAAAATAAG
CCTTGCCAATATAAACCTTTGTAATAAGTGCTAAGGAGATGCTGGCATAGAGCTCCAGCT
GAATAAGAGTCAAACTAGAGTGAGAGGAAAATAAAATGCCTGTGGCAGAAATATATTTTA
TAGATGTTGTTGGTGGGTCAGATGATATTGCTTGATTAGTACAAAGTTCAAAGTTCAGGG
ATAGAGATTGATGTGAAAGGGCTTTGTTAAATATGCTATCTAACATAGGCTGAATGGACA
CAAAAACAAGACCTACATATTTGCTGTTTATAAGAGACCCACTTCAGATCAAGAGACACA
TACAGGAGTTCCCGTCATGGCGCAGTGGTTAACGAATCCAACTAGGAACCATGAGGTTTC
GGGTTCGGTCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               42-241, - strand, RNAz p=0.98288

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-241, - strand, RNAz p=0.98288

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-375, gnl|bosTau2|chr5 (32358871-32359236)
               

               
               3-375, gnl|Hg17|chr12 (61315258-61315623)
               

               
               3-375, gnl|Mm7|chr10 (122450515-122450161)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-375, gnl|bosTau2|chr5 (32358871-32359236)
               

               
               3-375, gnl|Hg17|chr12 (61315258-61315623)
               

               
               3-375, gnl|Mm7|chr10 (122450515-122450161)

	3-375, gnl\|bosTau2\|chr5 (32358871-32359236)
	3-375, gnl\|Hg17\|chr12 (61315258-61315623)
	3-375, gnl\|Mm7\|chr10 (122450515-122450161)