Non-Coding RNA Search

Ss1.1-Utr1-UTR010030F10.5

Sequence:


               
               ACTTCCGGGCGGCGGCGGCGGCGGCTCGCAAGGGTATCCCTAGTATGACAGGTGCAGAGA
TTCTGCCTGCTCTGTAACCATGAAGGAGACGGACCGGGAGGCTGTTGCAACAGCTGTCCA
GAGGGTTGCCGGGATGCTCCAGCGCCCGGACCAGCTGGACAAAGTGGAGCAGTACCGCAG
AAGAGAGGCCAGGAAGAAGGCCTCCGTGGAAGCCAGGCTGAAGGCCGCCATCCAGTCGCA
GCTGGACGGGGTGCGCACGGGCCTGAGCCAGCTCCACAGCGCCCTGAGCGACGTGGGCGC
CATCCAGCGGTCCCTGGCGGACGTCAGCAAGGACTGGAGGCAGAGCATCAGCACCATCGA
GAGCCTGCGGGATGTGAAGGAGGCGGTCGTGCGGCACAGCCAGCTCGCCGCAGCCGTGGA
AAACCTCAAGAACATTTTCTCAGTGCCTGAGATCGTGCGGGAGACCCAGGACCTCATAGA
GCAAGGGGCGCTGCTGCAGGCTCACCGGAAGCTGATGGACCTGGAGTGCTCCCGGGACGG
GCTGATGTGCGAGCAGTACCGCATGGACAGCGGGAACACTCGCGACATGACCCTCATCCA
CAGCTACTTCGGGAGCACGCAGGGGCTCTCCGACGAGCTGGCCAAGCAGCTGTGGATGGT
GCTGCAGAGGTCGCTGGTCACCGTCCGCCGGGACCCCACTTTGCTGGTCTCCGTCGTCAG
GATCATTGAAAGGGAAGAAAAAATCGACAGGCGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTCCGGGCGGCGGCGGCGGCGGCTCGCAAGGGTATCCCTAGTATGACAGGTGCAGAGA
TTCTGCCTGCTCTGTAACCATGAAGGAGACGGACCGGGAGGCTGTTGCAACAGCTGTCCA
GAGGGTTGCCGGGATGCTCCAGCGCCCGGACCAGCTGGACAAAGTGGAGCAGTACCGCAG
AAGAGAGGCCAGGAAGAAGGCCTCCGTGGAAGCCAGGCTGAAGGCCGCCATCCAGTCGCA
GCTGGACGGGGTGCGCACGGGCCTGAGCCAGCTCCACAGCGCCCTGAGCGACGTGGGCGC
CATCCAGCGGTCCCTGGCGGACGTCAGCAAGGACTGGAGGCAGAGCATCAGCACCATCGA
GAGCCTGCGGGATGTGAAGGAGGCGGTCGTGCGGCACAGCCAGCTCGCCGCAGCCGTGGA
AAACCTCAAGAACATTTTCTCAGTGCCTGAGATCGTGCGGGAGACCCAGGACCTCATAGA
GCAAGGGGCGCTGCTGCAGGCTCACCGGAAGCTGATGGACCTGGAGTGCTCCCGGGACGG
GCTGATGTGCGAGCAGTACCGCATGGACAGCGGGAACACTCGCGACATGACCCTCATCCA
CAGCTACTTCGGGAGCACGCAGGGGCTCTCCGACGAGCTGGCCAAGCAGCTGTGGATGGT
GCTGCAGAGGTCGCTGGTCACCGTCCGCCGGGACCCCACTTTGCTGGTCTCCGTCGTCAG
GATCATTGAAAGGGAAGAAAAAATCGACAGGCGCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61811689|ref|XP_611802.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61811689|ref|XP_611802.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               79-224, + strand, RNAz p=0.887916

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-224, + strand, RNAz p=0.887916

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               40-224, gnl|bosTau2|chr9 (46031980-46032164)
               

               
               40-224, gnl|Hg17|chr5 (499281-499465)
               

               
               40-224, gnl|Mm7|chr13 (71139874-71139690)
               


               
               441-756, gnl|bosTau2|chr9 (46043638-46043953)
               

               
               441-756, gnl|Hg17|chr5 (506482-506797)
               

               
               441-756, gnl|Mm7|chr13 (71126076-71125761)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-224, gnl|bosTau2|chr9 (46031980-46032164)
               

               
               40-224, gnl|Hg17|chr5 (499281-499465)
               

               
               40-224, gnl|Mm7|chr13 (71139874-71139690)
               


               
               441-756, gnl|bosTau2|chr9 (46043638-46043953)
               

               
               441-756, gnl|Hg17|chr5 (506482-506797)
               

               
               441-756, gnl|Mm7|chr13 (71126076-71125761)

	40-224, gnl\|bosTau2\|chr9 (46031980-46032164)
	40-224, gnl\|Hg17\|chr5 (499281-499465)
	40-224, gnl\|Mm7\|chr13 (71139874-71139690)

	441-756, gnl\|bosTau2\|chr9 (46043638-46043953)
	441-756, gnl\|Hg17\|chr5 (506482-506797)
	441-756, gnl\|Mm7\|chr13 (71126076-71125761)