Non-Coding RNA Search

Ss1.1-Utr1-UTR010032G06.5

Sequence:


               
               AGTTCTGAATGAGGCTCCAATAACCCCATCCCCACAAAGACAAGTTTCCCATCCGCCCCA
CTAACTTCCCATTTAATTTCCCTGCCAGCCCTGGCCACTCTGTGGACCAGCCCCTCCCCT
TGCATATCACAGACCAGCCTAATCCTAGAAAAGTAAGCTGGGGAGACATGACTCTCCTCT
GACTCTCAGACTCCGGTGAAATGCCAGGGGAATGAGGTGGGAAGTGGGCCCTTGAGGTAT
GGTCCTCTCTGAACTTGTCCATACTAGTGGGGTTCCTCTACCCTCCCCCCCCAGAATCAG
AACTTGCAGGAGGCACACAGGTAAGGAGGACACGATGCCCAGAACAGAGTTTATACTGTT
TTCATGTTACTGGAGCGCCCACACTCCTCCCTTCAGTCTAGTCTCGATCTGATGTTAGGA
CAGGGAAAGGTATCTCCTGGGACTGGGGGACACTCAGCCAACCCAGGGGGCTTGTTGCCA
GGGTTCTAGGAAGGCCTTGAGTGGCGTGGAACTTGGGGTGGGAGAATTCACTCTCCCTCC
TTCACAAAGTCTGTAACTGGAGGGCCTCTGAGCCTGGGAGTTGAGAGGAGGGGGAGTTGC
TTCTCTGTAGGAGCCTTGTCTTCCCTCCATGGACTGTGAGTGGCTTGTGTGACCACTGAT
GCTTTCTCTGTCCCGGGCTCTGAGGAGTGGATTCATCAGACAGGACTGATGGGCTTCCCC
AAGCGCACAGGGCACTATATTAAGACTGGCTATTTGTAGGCACTGAACTTCCAAGGGGAA
AGGGAGGAGGATTGGGATTTGATTGCTTCCCAGAAGCTTCCTTTGGGTATCTGGGTGCCT
CTCCCTGGCCCCTGAGATCCTGGAGTGGGGATGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTCTGAATGAGGCTCCAATAACCCCATCCCCACAAAGACAAGTTTCCCATCCGCCCCA
CTAACTTCCCATTTAATTTCCCTGCCAGCCCTGGCCACTCTGTGGACCAGCCCCTCCCCT
TGCATATCACAGACCAGCCTAATCCTAGAAAAGTAAGCTGGGGAGACATGACTCTCCTCT
GACTCTCAGACTCCGGTGAAATGCCAGGGGAATGAGGTGGGAAGTGGGCCCTTGAGGTAT
GGTCCTCTCTGAACTTGTCCATACTAGTGGGGTTCCTCTACCCTCCCCCCCCAGAATCAG
AACTTGCAGGAGGCACACAGGTAAGGAGGACACGATGCCCAGAACAGAGTTTATACTGTT
TTCATGTTACTGGAGCGCCCACACTCCTCCCTTCAGTCTAGTCTCGATCTGATGTTAGGA
CAGGGAAAGGTATCTCCTGGGACTGGGGGACACTCAGCCAACCCAGGGGGCTTGTTGCCA
GGGTTCTAGGAAGGCCTTGAGTGGCGTGGAACTTGGGGTGGGAGAATTCACTCTCCCTCC
TTCACAAAGTCTGTAACTGGAGGGCCTCTGAGCCTGGGAGTTGAGAGGAGGGGGAGTTGC
TTCTCTGTAGGAGCCTTGTCTTCCCTCCATGGACTGTGAGTGGCTTGTGTGACCACTGAT
GCTTTCTCTGTCCCGGGCTCTGAGGAGTGGATTCATCAGACAGGACTGATGGGCTTCCCC
AAGCGCACAGGGCACTATATTAAGACTGGCTATTTGTAGGCACTGAACTTCCAAGGGGAA
AGGGAGGAGGATTGGGATTTGATTGCTTCCCAGAAGCTTCCTTTGGGTATCTGGGTGCCT
CTCCCTGGCCCCTGAGATCCTGGAGTGGGGATGGTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               765-876, - strand, RNAz p=0.973767

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               765-876, - strand, RNAz p=0.973767

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               818-898, + strand, RNAmicro p=0.928605

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               818-898, + strand, RNAmicro p=0.928605

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               2-168, gnl|bosTau2|chr17 (38412698-38412860)
               

               
               2-168, gnl|canFam2|chr26 (19231126-19231314)
               

               
               2-168, gnl|hg17|chr12 (119165322-119165522)
               

               
               2-168, gnl|Hg17|chr12 (119165558-119165339)
               

               
               2-168, gnl|mm7|chr5 (114728249-114728095)
               

               
               2-168, gnl|Mm7|chr5 (114728063-114728260)
               

               
               2-168, gnl|monDom2|scaffold_101 (32562-32345)
               

               
               2-168, gnl|panTro1|chr10 (122165903-122166103)
               

               
               2-168, gnl|rheMac2|chr11 (121269790-121269991)
               

               
               2-168, gnl|rn3|chr12 (42233132-42233297)
               


               
               316-876, gnl|bosTau2|chr17 (38412961-38413529)
               

               
               316-876, gnl|Hg17|chr12 (119165196-119164678)
               

               
               316-876, gnl|Mm7|chr5 (114728377-114728863)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-168, gnl|bosTau2|chr17 (38412698-38412860)
               

               
               2-168, gnl|canFam2|chr26 (19231126-19231314)
               

               
               2-168, gnl|hg17|chr12 (119165322-119165522)
               

               
               2-168, gnl|Hg17|chr12 (119165558-119165339)
               

               
               2-168, gnl|mm7|chr5 (114728249-114728095)
               

               
               2-168, gnl|Mm7|chr5 (114728063-114728260)
               

               
               2-168, gnl|monDom2|scaffold_101 (32562-32345)
               

               
               2-168, gnl|panTro1|chr10 (122165903-122166103)
               

               
               2-168, gnl|rheMac2|chr11 (121269790-121269991)
               

               
               2-168, gnl|rn3|chr12 (42233132-42233297)
               


               
               316-876, gnl|bosTau2|chr17 (38412961-38413529)
               

               
               316-876, gnl|Hg17|chr12 (119165196-119164678)
               

               
               316-876, gnl|Mm7|chr5 (114728377-114728863)

	2-168, gnl\|bosTau2\|chr17 (38412698-38412860)
	2-168, gnl\|canFam2\|chr26 (19231126-19231314)
	2-168, gnl\|hg17\|chr12 (119165322-119165522)
	2-168, gnl\|Hg17\|chr12 (119165558-119165339)
	2-168, gnl\|mm7\|chr5 (114728249-114728095)
	2-168, gnl\|Mm7\|chr5 (114728063-114728260)
	2-168, gnl\|monDom2\|scaffold_101 (32562-32345)
	2-168, gnl\|panTro1\|chr10 (122165903-122166103)
	2-168, gnl\|rheMac2\|chr11 (121269790-121269991)
	2-168, gnl\|rn3\|chr12 (42233132-42233297)

	316-876, gnl\|bosTau2\|chr17 (38412961-38413529)
	316-876, gnl\|Hg17\|chr12 (119165196-119164678)
	316-876, gnl\|Mm7\|chr5 (114728377-114728863)