Non-Coding RNA Search

Ss1.1-Utr1-UTR010033H08.5

Sequence:


               
               CCTCAGGGAAATGAGTGTAGGAACCCCAGGTAAAATCTAAGGAGACCTATGGTCCAGGTC
ACACACATAATATATGTAATTCTGTGAGATCAGAGTCACTTACTAAATAGTCTTCAAATC
CCTAACATAAAGATCAAATTCCTTTGCAACCTTTCAGAGAAAGTCTCCACCAATTAAACT
TAAGAACATAGGAAATGTTAAGACAGAGAGGTTTAGCAAAGTCAGCTTCTGTTAGCTTTT
GTACCTTTTACCCCCTTAACTCCCTTTGTAACCATTTTCCAAATTATCTTCTTGCTGAGT
GTTTACCCTAGAATGTACACAGATTCCTTCCACTAGAAGAGGTCTTTTGTTCATTTCCTC
TAGTTGTGTAGTTCAGCTCACTTGGAAACTTCTGATTGTTCATTCAGAATTCAGTCCTTT
TTTAGGGTTTTATCTCCTTTGAAATGAGCTGAACTGAACAAAAGTTCTCTCTCTTCATTT
TCATCATATGGAAGTGGGTTCATGGCTCAGGAAGCCTGCCTGCTTTCCTGCCGGCTCTGA
AAATAAGGGATTCTCTCAAGGGCCAGGGGGCAGCAAATTCCCAGGAGCCTCTGGACTCAC
CTGTCAGCCCCCACCTGCTTCCGGTCCCATAGGTGGACTTGGTATGAAATGGGGAGTCTT
TGGAGAATTTTAAATAGCCAAAGTCATAATCAGAGAATCAGAGGTCTGTTTTAGAAAAGT
TCATCAGCCGTCTAAAGTTGACTTATTTAATCAGCTTAAATAAGATAACTTAAAGAGCAG
AGAAATCTGATACGAAAAGACTAGTTAATGGTCCTGATGAAAAAGTATTTATGGCTTGAG
TAAGGGTACTATCAAGGCGATGGGAGAACCCCTGCAGAGGTAAAATGTGTTGGGTTAATA
ATTCATCAGCTGTATAGAAAGAGAATAACATGATTAGGTAGGTGGTCCAAAAAGATCCCG
GGGTGTAAGCCTGTGTGACTTGGATGATATCGTTCCATTAAGAAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCAGGGAAATGAGTGTAGGAACCCCAGGTAAAATCTAAGGAGACCTATGGTCCAGGTC
ACACACATAATATATGTAATTCTGTGAGATCAGAGTCACTTACTAAATAGTCTTCAAATC
CCTAACATAAAGATCAAATTCCTTTGCAACCTTTCAGAGAAAGTCTCCACCAATTAAACT
TAAGAACATAGGAAATGTTAAGACAGAGAGGTTTAGCAAAGTCAGCTTCTGTTAGCTTTT
GTACCTTTTACCCCCTTAACTCCCTTTGTAACCATTTTCCAAATTATCTTCTTGCTGAGT
GTTTACCCTAGAATGTACACAGATTCCTTCCACTAGAAGAGGTCTTTTGTTCATTTCCTC
TAGTTGTGTAGTTCAGCTCACTTGGAAACTTCTGATTGTTCATTCAGAATTCAGTCCTTT
TTTAGGGTTTTATCTCCTTTGAAATGAGCTGAACTGAACAAAAGTTCTCTCTCTTCATTT
TCATCATATGGAAGTGGGTTCATGGCTCAGGAAGCCTGCCTGCTTTCCTGCCGGCTCTGA
AAATAAGGGATTCTCTCAAGGGCCAGGGGGCAGCAAATTCCCAGGAGCCTCTGGACTCAC
CTGTCAGCCCCCACCTGCTTCCGGTCCCATAGGTGGACTTGGTATGAAATGGGGAGTCTT
TGGAGAATTTTAAATAGCCAAAGTCATAATCAGAGAATCAGAGGTCTGTTTTAGAAAAGT
TCATCAGCCGTCTAAAGTTGACTTATTTAATCAGCTTAAATAAGATAACTTAAAGAGCAG
AGAAATCTGATACGAAAAGACTAGTTAATGGTCCTGATGAAAAAGTATTTATGGCTTGAG
TAAGGGTACTATCAAGGCGATGGGAGAACCCCTGCAGAGGTAAAATGTGTTGGGTTAATA
ATTCATCAGCTGTATAGAAAGAGAATAACATGATTAGGTAGGTGGTCCAAAAAGATCCCG
GGGTGTAAGCCTGTGTGACTTGGATGATATCGTTCCATTAAGAAAAGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               358-465, - strand, RNAz p=0.999935
               

               
               710-813, + strand, RNAz p=0.540082

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               358-465, - strand, RNAz p=0.999935
               

               
               710-813, + strand, RNAz p=0.540082

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               358-465, BP463341 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|BP463341.1|), blast E-value=0, identity=100%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               358-465, BP463341 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|BP463341.1|), blast E-value=0, identity=100%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1007, gnl|bosTau2|chr3 (1215962-1214939)
               

               
               1-1007, gnl|Hg17|chr8 (13069340-13067973)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1007, gnl|bosTau2|chr3 (1215962-1214939)
               

               
               1-1007, gnl|Hg17|chr8 (13069340-13067973)

	358-465, - strand, RNAz p=0.999935
	710-813, + strand, RNAz p=0.540082

	1-1007, gnl\|bosTau2\|chr3 (1215962-1214939)
	1-1007, gnl\|Hg17\|chr8 (13069340-13067973)