Ss1.1-Utr1-UTR010036D09.5
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CTGGAGCTTTGGTAGGGAGGAAGGTGATTATTTTTTGTGCTCTTAAAATTCCCATTGACT
TAACAAATAGAAGTTGAATTTGCAGAACGCTGTGTGCCAGACTGTACATAGGGTATATGA
GATATATTCCACAGAAAATTTGCCGTCTTAATGTCTGTGTTCACTTTGATTTACAGAAAA
TCAATCCCGAGAATTCCACTTTAAAGCACGCTATACTTTGGAATTTGAACTCCCTAGTTC
TGAAAGCTCGCTGTGTTCAGTTTGCTTGGTTTATTAAATTAAAGAGGTGAAGGCGAACCC
TGTATGGTGATGTTTGAAAAGAAAAGATGACGGGGAGAATCATCTGTGTTAACCTTTGGG
GAACTTTAGCCTATTGATTTAAAGGGGACAAAAAAGATTTGCAGTTTATTGCAGACAGCC
ATATGCGGGATTATTCCAAACCAGGGCCAAAGTTCAAATTCCCCACAATATCAGGAGAAA
TTCTCTCTTCAGTCTGTTACTGTTTTAAAAACAACTGCCCCTTTGGCTGATTAAAAGTGA
TTTTAACTCTAGTGCTAAATACCAAAATGAAAGCAGCAGATAGGGAAGCGCTTGCATGTC
TATTTGCTTTTACCCTAAGCCGGGCCATTAAAGGTAATTAATTTATGGGCTGGCAGAGCC
TGCTGCCTTTCTTCTGTGGATTTGTTCGTTCTGCGTGCAGTATGGGATTCCAAATATAAC
TTGTATCTACCAGTTCTGATCCCTTTGGTTTCCCCTGTCCCTTGGAGATTTCAGGATTAG
CATGAAAGCCTTCTGTTTTTAGAAGAGCAAGTCTTGACTCTGGATTGGAGAAGACTATGA
ATCACCCAGTCGTCAGAGCCATGGGATTCTTAGCATATGAGGCCGTGGCGTTGGTAGGAA
TTTTCCTCATGTTGCCATTCCCACTTTGACCCTTTGCTAACGTAGGATCCACAAAGTTAA
GCACATTTACAAGCAGAACATTTTGAAGAAAAATTGTTTGAGGCTTCTTACCTATGTGTG
TTTCCTTTTCTGTGCCGCTAGTCTTATGTCTGGTGCATTCTCAGTAAGTTGAATGAGACG
ATCCACTTTGTGGGGAATCGTGTTTTTGCACAGGGAGGACTGTCAGGAATTCATATCAAC
CAAAAGTTGATACCCAGGAAGCAGGAGGGTTTACAGTTGTTATTTAAATACTCTGTTATT
ATAGCTCAGGTG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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CTGGAGCTTTGGTAGGGAGGAAGGTGATTATTTTTTGTGCTCTTAAAATTCCCATTGACT
TAACAAATAGAAGTTGAATTTGCAGAACGCTGTGTGCCAGACTGTACATAGGGTATATGA
GATATATTCCACAGAAAATTTGCCGTCTTAATGTCTGTGTTCACTTTGATTTACAGAAAA
TCAATCCCGAGAATTCCACTTTAAAGCACGCTATACTTTGGAATTTGAACTCCCTAGTTC
TGAAAGCTCGCTGTGTTCAGTTTGCTTGGTTTATTAAATTAAAGAGGTGAAGGCGAACCC
TGTATGGTGATGTTTGAAAAGAAAAGATGACGGGGAGAATCATCTGTGTTAACCTTTGGG
GAACTTTAGCCTATTGATTTAAAGGGGACAAAAAAGATTTGCAGTTTATTGCAGACAGCC
ATATGCGGGATTATTCCAAACCAGGGCCAAAGTTCAAATTCCCCACAATATCAGGAGAAA
TTCTCTCTTCAGTCTGTTACTGTTTTAAAAACAACTGCCCCTTTGGCTGATTAAAAGTGA
TTTTAACTCTAGTGCTAAATACCAAAATGAAAGCAGCAGATAGGGAAGCGCTTGCATGTC
TATTTGCTTTTACCCTAAGCCGGGCCATTAAAGGTAATTAATTTATGGGCTGGCAGAGCC
TGCTGCCTTTCTTCTGTGGATTTGTTCGTTCTGCGTGCAGTATGGGATTCCAAATATAAC
TTGTATCTACCAGTTCTGATCCCTTTGGTTTCCCCTGTCCCTTGGAGATTTCAGGATTAG
CATGAAAGCCTTCTGTTTTTAGAAGAGCAAGTCTTGACTCTGGATTGGAGAAGACTATGA
ATCACCCAGTCGTCAGAGCCATGGGATTCTTAGCATATGAGGCCGTGGCGTTGGTAGGAA
TTTTCCTCATGTTGCCATTCCCACTTTGACCCTTTGCTAACGTAGGATCCACAAAGTTAA
GCACATTTACAAGCAGAACATTTTGAAGAAAAATTGTTTGAGGCTTCTTACCTATGTGTG
TTTCCTTTTCTGTGCCGCTAGTCTTATGTCTGGTGCATTCTCAGTAAGTTGAATGAGACG
ATCCACTTTGTGGGGAATCGTGTTTTTGCACAGGGAGGACTGTCAGGAATTCATATCAAC
CAAAAGTTGATACCCAGGAAGCAGGAGGGTTTACAGTTGTTATTTAAATACTCTGTTATT
ATAGCTCAGGTG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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770-858, + strand, RNAmicro p=0.999992 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
770-858, + strand, RNAmicro p=0.999992 |
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116-1011, gnl|bosTau2|chr4 (39482128-39483022) |
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116-1011, gnl|Hg17|chr7 (27776031-27775087) |
| |
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1021-1209, gnl|bosTau2|chr4 (39483175-39483365) |
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1021-1209, gnl|canFam2|chr14 (44015755-44016137) |
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1021-1209, gnl|dasNov1|scaffold_1407 (58795-58477) |
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1021-1209, gnl|hg17|chr7 (27774842-27775223) |
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1021-1209, gnl|Hg17|chr7 (27775077-27774890) |
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1021-1209, gnl|loxAfr1|scaffold_10238 (46695-47064) |
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1021-1209, gnl|oryCun1|scaffold_188609 (104883-104530) |
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1021-1209, gnl|panTro1|chr6 (28906486-28906867) |
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1021-1209, gnl|rheMac2|chr3 (98260298-98259913) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
116-1011, gnl|bosTau2|chr4 (39482128-39483022) |
|
116-1011, gnl|Hg17|chr7 (27776031-27775087) |
| |
|
1021-1209, gnl|bosTau2|chr4 (39483175-39483365) |
|
1021-1209, gnl|canFam2|chr14 (44015755-44016137) |
|
1021-1209, gnl|dasNov1|scaffold_1407 (58795-58477) |
|
1021-1209, gnl|hg17|chr7 (27774842-27775223) |
|
1021-1209, gnl|Hg17|chr7 (27775077-27774890) |
|
1021-1209, gnl|loxAfr1|scaffold_10238 (46695-47064) |
|
1021-1209, gnl|oryCun1|scaffold_188609 (104883-104530) |
|
1021-1209, gnl|panTro1|chr6 (28906486-28906867) |
|
1021-1209, gnl|rheMac2|chr3 (98260298-98259913) |
