Non-Coding RNA Search

Ss1.1-Utr1-UTR010036G11.5

Sequence:


               
               GGCTGGCCACCAAGGATAGGAAATTTCACATCCAGTCTCAGGAGGAGCACTAGAATGAAC
GCCCTCCCCAAACCTCCCCTCATCCCCGCCCCAGGATTTCTTACACCCACTCCTACCTCC
CTGGCAGTGCCCACCTGTGCTTTGAAGCAAGTCTTTCTGTTTAGAAAAGGCTCTTTTGGT
TAACTAATGTTATTCTTGTTCTTCAACTTTACAATGGCCTGAGAGAAATTTTGCCTCAGG
ACATGTTTTTAGTTAATGATTCAAGCATCACCTGAACAGATCAATTGAAGTAACAAAACA
CTAGTGCAATTATCCAGTGTCCTTATGTGTTTCCAGGACACAGCTGTCCAGAAGAATTCT
TACCATGGGTCTGAAGAATTTGCATTGTTAAGAGCCAGGCTCTCAGTCAGAGAAGCTGTG
TGCATTTAGGAAATGGGGGAAGGATTAATGGAGCCCTCCTAGCGCATTGCCCCAGCCTGG
CCTTGTTCTCTGCAGCACAAATGCTAAATCAATAGCTTGCTTACTTTGCCTCTCACGCTG
CTTGTTCTTTTCTCCCTTAGAATAATGCAGTGAGGCTTTTTCCTTACTGTTAACTCAGAG
AATGCTTGTAAAGTGTGGGTTAAATATGCGAAGAAAGTCACTTTTATTCTCAGGTTTGGA
AAAAAACTGAGCCACTTTTGGCAGATCTTTGATGTTTTCCGATATGCTGGGAATAGACGT
TCTAGATCCTTATTTTCCAGGCTAACAATTACATAAAGTTAAAATGTTGTTTTAGCATAT
AAAGTCATAGAGAAAAATCTAACCCATTACACATCAAGCTAAAAAGAGAGGCATCTGGGG
AAAGGAGAAAGGGGACGTGGAAGAGGAAATACTTGTGTTTTAGGTGTGTGTCCTTTACAG
TGAGAGTATGTTTATTACATAATTGTATAAGAAGAA------------------------
------------------------------------------------------------
------------------------------------------------AAAAAAACAAAC
AACAACAACAAAAAAAAAAAAAAACAAAGACAAATTTTATTCTAGTCGCACAATTGCTTT
CTGCTATGGCCCACACAATAGAAATAACCCCAGTCTTCTCTATTATGTTCATTTGTTGGG
CTCAGGGCACCCTGCCTTTTTAAACCTCTTTTTGATAAAGAACAACTACTTGCAAATTTA
TTTTTTTTTAAATAAAACCTGCTTGCTTACTGATGTGTAATGAAGGACAGAGTCCTTTCC
AGGACCCTGGATCCCATGCCCCAAATCTAAGGCATGTCTTTTCCCAGTGCCCACCTGGTC
AGGGATGCTGCTTGGTAAACATGAACTAGAGCCTTGGTTATTGATAGGCCATCAGGGTGG
TGTTAGAGAGGATGAAACACCCACATTCAGTAGAAAGAGCCCACCTGGCATTAGAAATGT
TCCTGTCCCCACACGTGCCCTCATTCCTGCTCAGCCCTAGACAATCCCTTCAGCCAAGAC
ATCATTGCACTTGCAGATTTACCTAATCTGTTGACCGCCTACATTGCATTCACTATTGAA
CAAGCTAAAGTCCAAAACTAACTCTAATTCCTTGACTGATGTTCAACTGAGACCAAAAGA
AAAGGAAAAGAAATAGCCATTTAAAGAAAATACCTCTTGATTTCTTTTTTTCTTGTTTTA
TTGGATAAGCGAAATTGTCCATTCTTCAGTGGCTAGGGACAGATATTTTCTTGTGTTTTG
CTCTGCGTTAAAAATGGAACAGAGCTTGACCTTCCTCCAGGGCAAAAAATAACTCGTTAA
CATTGGATACTGAATATGCCACAAAATAAACTGGAATACTGCACATCATTTCTAGAAGAA
AGCATGGCCCAAGAAATAAATACTCTACATCAAGATGGAGTGTCAAGATCAAGATTGGCT
TGGAGATACCTGGCATTTTATTAACTCTTTATGACCTCTTCTTCGTAAGATTCGAAGCTA
CTACAAGGACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGGCCACCAAGGATAGGAAATTTCACATCCAGTCTCAGGAGGAGCACTAGAATGAAC
GCCCTCCCCAAACCTCCCCTCATCCCCGCCCCAGGATTTCTTACACCCACTCCTACCTCC
CTGGCAGTGCCCACCTGTGCTTTGAAGCAAGTCTTTCTGTTTAGAAAAGGCTCTTTTGGT
TAACTAATGTTATTCTTGTTCTTCAACTTTACAATGGCCTGAGAGAAATTTTGCCTCAGG
ACATGTTTTTAGTTAATGATTCAAGCATCACCTGAACAGATCAATTGAAGTAACAAAACA
CTAGTGCAATTATCCAGTGTCCTTATGTGTTTCCAGGACACAGCTGTCCAGAAGAATTCT
TACCATGGGTCTGAAGAATTTGCATTGTTAAGAGCCAGGCTCTCAGTCAGAGAAGCTGTG
TGCATTTAGGAAATGGGGGAAGGATTAATGGAGCCCTCCTAGCGCATTGCCCCAGCCTGG
CCTTGTTCTCTGCAGCACAAATGCTAAATCAATAGCTTGCTTACTTTGCCTCTCACGCTG
CTTGTTCTTTTCTCCCTTAGAATAATGCAGTGAGGCTTTTTCCTTACTGTTAACTCAGAG
AATGCTTGTAAAGTGTGGGTTAAATATGCGAAGAAAGTCACTTTTATTCTCAGGTTTGGA
AAAAAACTGAGCCACTTTTGGCAGATCTTTGATGTTTTCCGATATGCTGGGAATAGACGT
TCTAGATCCTTATTTTCCAGGCTAACAATTACATAAAGTTAAAATGTTGTTTTAGCATAT
AAAGTCATAGAGAAAAATCTAACCCATTACACATCAAGCTAAAAAGAGAGGCATCTGGGG
AAAGGAGAAAGGGGACGTGGAAGAGGAAATACTTGTGTTTTAGGTGTGTGTCCTTTACAG
TGAGAGTATGTTTATTACATAATTGTATAAGAAGAA------------------------
------------------------------------------------------------
------------------------------------------------AAAAAAACAAAC
AACAACAACAAAAAAAAAAAAAAACAAAGACAAATTTTATTCTAGTCGCACAATTGCTTT
CTGCTATGGCCCACACAATAGAAATAACCCCAGTCTTCTCTATTATGTTCATTTGTTGGG
CTCAGGGCACCCTGCCTTTTTAAACCTCTTTTTGATAAAGAACAACTACTTGCAAATTTA
TTTTTTTTTAAATAAAACCTGCTTGCTTACTGATGTGTAATGAAGGACAGAGTCCTTTCC
AGGACCCTGGATCCCATGCCCCAAATCTAAGGCATGTCTTTTCCCAGTGCCCACCTGGTC
AGGGATGCTGCTTGGTAAACATGAACTAGAGCCTTGGTTATTGATAGGCCATCAGGGTGG
TGTTAGAGAGGATGAAACACCCACATTCAGTAGAAAGAGCCCACCTGGCATTAGAAATGT
TCCTGTCCCCACACGTGCCCTCATTCCTGCTCAGCCCTAGACAATCCCTTCAGCCAAGAC
ATCATTGCACTTGCAGATTTACCTAATCTGTTGACCGCCTACATTGCATTCACTATTGAA
CAAGCTAAAGTCCAAAACTAACTCTAATTCCTTGACTGATGTTCAACTGAGACCAAAAGA
AAAGGAAAAGAAATAGCCATTTAAAGAAAATACCTCTTGATTTCTTTTTTTCTTGTTTTA
TTGGATAAGCGAAATTGTCCATTCTTCAGTGGCTAGGGACAGATATTTTCTTGTGTTTTG
CTCTGCGTTAAAAATGGAACAGAGCTTGACCTTCCTCCAGGGCAAAAAATAACTCGTTAA
CATTGGATACTGAATATGCCACAAAATAAACTGGAATACTGCACATCATTTCTAGAAGAA
AGCATGGCCCAAGAAATAAATACTCTACATCAAGATGGAGTGTCAAGATCAAGATTGGCT
TGGAGATACCTGGCATTTTATTAACTCTTTATGACCTCTTCTTCGTAAGATTCGAAGCTA
CTACAAGGACAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               9-125, - strand, RNAz p=0.542363
               

               
               654-770, + strand, RNAz p=0.751434

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               9-125, - strand, RNAz p=0.542363
               

               
               654-770, + strand, RNAz p=0.751434

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               9-950, gnl|bosTau2|chr22 (9022125-9021165)
               

               
               9-950, gnl|Hg17|chr3 (37978408-37979363)
               


               
               1124-1914, gnl|bosTau2|chr22 (9020836-9020033)
               

               
               1124-1914, gnl|Hg17|chr3 (37979507-37980281)
               

               
               1124-1914, gnl|Mm7|chr9 (118705269-118706168)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-950, gnl|bosTau2|chr22 (9022125-9021165)
               

               
               9-950, gnl|Hg17|chr3 (37978408-37979363)
               


               
               1124-1914, gnl|bosTau2|chr22 (9020836-9020033)
               

               
               1124-1914, gnl|Hg17|chr3 (37979507-37980281)
               

               
               1124-1914, gnl|Mm7|chr9 (118705269-118706168)

	9-125, - strand, RNAz p=0.542363
	654-770, + strand, RNAz p=0.751434

	9-950, gnl\|bosTau2\|chr22 (9022125-9021165)
	9-950, gnl\|Hg17\|chr3 (37978408-37979363)

	1124-1914, gnl\|bosTau2\|chr22 (9020836-9020033)
	1124-1914, gnl\|Hg17\|chr3 (37979507-37980281)
	1124-1914, gnl\|Mm7\|chr9 (118705269-118706168)