Ss1.1-Utr1-UTR010039A12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCCGAGCGCCAACGCTGCCCGCGCGGGGTGCGGAGCCCGAGCCCGAGCCCGAGCCCGA GGCGCGGCCGCCGCTGCCATGCGCTGGGTCCGCGCGCTACTGAAGAATGCGTCCCTGGCA GGGGCGCCCAAGTACATCGAGCACTTCAGCAAGTTCTCCCCGTCCCCGTTGTCCATGAAG CAGTTTCTGGACTTCGGATCCAGCAATGCCTGTGAGAAAACCTCGTTCACCTTCCTCAGG CAGGAGCTGCCAGTGCGCCTGGCCAACATCATGAAAGAGATCAACCTGCTTCCCGACCGG GTGCTGAGCACACCCTCGGTGCAGCTGGTACAGAGCTGGTGAGACCCCTGCCTAGGTCCC TGCACCTCCCGCTCCATTGCCAGATGCCCTCTGCCCACCGCAGCCTTGAGAGAGATGGGG ACCGAGGGGAGGCACCAGGGCTCCCACAATGACGTGGTACCCACCATGGCGCAGGGCGTG CTGGAGTACAAGGACGCCTACGGCGACGACCCGGTCCCCTCCACCTTCATCCAGTACTTC CTGGACCGCTTCTACCTCAGCCGCGAAATGATCCTTATGCTCATCAACCAGCACACCCTG GGCTAATGTCAGAGCACGAACCCAGCCCACCCTAAACACATTGGCAGCATTGACCCCAAC ACCCATCTGGGGGAGGTGGTGAAAAAACAGAAATAGGGAGAAGCAGATCTTCAAATTATG TATTACATGGCCTCACCTGACCTGGAGATCCAGGAGATCAATGCATCCAACGCCAAACAG CCAATTCACATGGTCTATGTCCCCTCCCACCTCTACCACATGCTGTTTGAACTCTTCAAG AACGCCATGCGAGCAACTGTGGAAAGCCATGAATCCAGCCTCACTCTCCCATCTATCAAG GTCATGGTGGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCCGAGCGCCAACGCTGCCCGCGCGGGGTGCGGAGCCCGAGCCCGAGCCCGAGCCCGA GGCGCGGCCGCCGCTGCCATGCGCTGGGTCCGCGCGCTACTGAAGAATGCGTCCCTGGCA GGGGCGCCCAAGTACATCGAGCACTTCAGCAAGTTCTCCCCGTCCCCGTTGTCCATGAAG CAGTTTCTGGACTTCGGATCCAGCAATGCCTGTGAGAAAACCTCGTTCACCTTCCTCAGG CAGGAGCTGCCAGTGCGCCTGGCCAACATCATGAAAGAGATCAACCTGCTTCCCGACCGG GTGCTGAGCACACCCTCGGTGCAGCTGGTACAGAGCTGGTGAGACCCCTGCCTAGGTCCC TGCACCTCCCGCTCCATTGCCAGATGCCCTCTGCCCACCGCAGCCTTGAGAGAGATGGGG ACCGAGGGGAGGCACCAGGGCTCCCACAATGACGTGGTACCCACCATGGCGCAGGGCGTG CTGGAGTACAAGGACGCCTACGGCGACGACCCGGTCCCCTCCACCTTCATCCAGTACTTC CTGGACCGCTTCTACCTCAGCCGCGAAATGATCCTTATGCTCATCAACCAGCACACCCTG GGCTAATGTCAGAGCACGAACCCAGCCCACCCTAAACACATTGGCAGCATTGACCCCAAC ACCCATCTGGGGGAGGTGGTGAAAAAACAGAAATAGGGAGAAGCAGATCTTCAAATTATG TATTACATGGCCTCACCTGACCTGGAGATCCAGGAGATCAATGCATCCAACGCCAAACAG CCAATTCACATGGTCTATGTCCCCTCCCACCTCTACCACATGCTGTTTGAACTCTTCAAG AACGCCATGCGAGCAACTGTGGAAAGCCATGAATCCAGCCTCACTCTCCCATCTATCAAG GTCATGGTGGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 345-440, - strand, RNAz p=0.76798 | |
| 444-595, - strand, RNAz p=0.933432 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 345-440, - strand, RNAz p=0.76798 | |
| 444-595, - strand, RNAz p=0.933432 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 196-440, gnl|bosTau2|chr19 (29273188-29272945) | |
| 196-440, gnl|canFam2|chr9 (29426718-29426882) | |
| 196-440, gnl|danRer3|chr9 (7907013-7906854) | |
| 196-440, gnl|dasNov1|scaffold_6762 (14208-14358) | |
| 196-440, gnl|echTel1|scaffold_282037 (5054-4906) | |
| 196-440, gnl|fr1|chrUn (35470589-35470742) | |
| 196-440, gnl|galGal2|chrUn (60412654-60412824) | |
| 196-440, gnl|hg17|chr17 (45529772-45529936) | |
| 196-440, gnl|Hg17|chr17 (45529785-45530051) | |
| 196-440, gnl|loxAfr1|scaffold_2760 (80740-80902) | |
| 196-440, gnl|mm7|chr11 (95148544-95148379) | |
| 196-440, gnl|Mm7|chr11 (95148530-95148297) | |
| 196-440, gnl|monDom2|scaffold_18 (43316649-43316487) | |
| 196-440, gnl|oryCun1|scaffold_200279 (23572-23734) | |
| 196-440, gnl|panTro1|chr19_random (31146699-31146863) | |
| 196-440, gnl|rheMac2|chr16 (34334153-34334317) | |
| 196-440, gnl|rn3|chr10 (83737531-83737368) | |
| 196-440, gnl|tetNig1|chr2 (11383938-11383766) | |
| 196-440, gnl|xenTro1|scaffold_640 (199775-199935) | |
| 444-595, gnl|bosTau2|chr19 (29265298-29265147) | |
| 444-595, gnl|canFam2|chr9 (29434251-29434453) | |
| 444-595, gnl|danRer3|chr9 (7903977-7903786) | |
| 444-595, gnl|dasNov1|scaffold_44507 (3399-3605) | |
| 444-595, gnl|echTel1|scaffold_309297 (1588-1384) | |
| 444-595, gnl|fr1|chrUn (35471909-35472115) | |
| 444-595, gnl|galGal2|chr1 (111463332-111463134) | |
| 444-595, gnl|hg17|chr17 (45538236-45538451) | |
| 444-595, gnl|Hg17|chr17 (45538281-45538432) | |
| 444-595, gnl|loxAfr1|scaffold_10870 (24118-24310) | |
| 444-595, gnl|mm7|chr11 (95141072-95140854) | |
| 444-595, gnl|Mm7|chr11 (95141026-95140875) | |
| 444-595, gnl|monDom2|scaffold_18 (43300145-43299928) | |
| 444-595, gnl|oryCun1|scaffold_98507 (1459-1277) | |
| 444-595, gnl|panTro1|chr19_random (31155158-31155373) | |
| 444-595, gnl|rheMac2|chr16 (34342476-34342691) | |
| 444-595, gnl|rn3|chr10 (83730225-83730011) | |
| 444-595, gnl|tetNig1|chr2 (11383590-11383376) | |
| 444-595, gnl|xenTro1|scaffold_640 (200890-201087) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 196-440, gnl|bosTau2|chr19 (29273188-29272945) | |
| 196-440, gnl|canFam2|chr9 (29426718-29426882) | |
| 196-440, gnl|danRer3|chr9 (7907013-7906854) | |
| 196-440, gnl|dasNov1|scaffold_6762 (14208-14358) | |
| 196-440, gnl|echTel1|scaffold_282037 (5054-4906) | |
| 196-440, gnl|fr1|chrUn (35470589-35470742) | |
| 196-440, gnl|galGal2|chrUn (60412654-60412824) | |
| 196-440, gnl|hg17|chr17 (45529772-45529936) | |
| 196-440, gnl|Hg17|chr17 (45529785-45530051) | |
| 196-440, gnl|loxAfr1|scaffold_2760 (80740-80902) | |
| 196-440, gnl|mm7|chr11 (95148544-95148379) | |
| 196-440, gnl|Mm7|chr11 (95148530-95148297) | |
| 196-440, gnl|monDom2|scaffold_18 (43316649-43316487) | |
| 196-440, gnl|oryCun1|scaffold_200279 (23572-23734) | |
| 196-440, gnl|panTro1|chr19_random (31146699-31146863) | |
| 196-440, gnl|rheMac2|chr16 (34334153-34334317) | |
| 196-440, gnl|rn3|chr10 (83737531-83737368) | |
| 196-440, gnl|tetNig1|chr2 (11383938-11383766) | |
| 196-440, gnl|xenTro1|scaffold_640 (199775-199935) | |
| 444-595, gnl|bosTau2|chr19 (29265298-29265147) | |
| 444-595, gnl|canFam2|chr9 (29434251-29434453) | |
| 444-595, gnl|danRer3|chr9 (7903977-7903786) | |
| 444-595, gnl|dasNov1|scaffold_44507 (3399-3605) | |
| 444-595, gnl|echTel1|scaffold_309297 (1588-1384) | |
| 444-595, gnl|fr1|chrUn (35471909-35472115) | |
| 444-595, gnl|galGal2|chr1 (111463332-111463134) | |
| 444-595, gnl|hg17|chr17 (45538236-45538451) | |
| 444-595, gnl|Hg17|chr17 (45538281-45538432) | |
| 444-595, gnl|loxAfr1|scaffold_10870 (24118-24310) | |
| 444-595, gnl|mm7|chr11 (95141072-95140854) | |
| 444-595, gnl|Mm7|chr11 (95141026-95140875) | |
| 444-595, gnl|monDom2|scaffold_18 (43300145-43299928) | |
| 444-595, gnl|oryCun1|scaffold_98507 (1459-1277) | |
| 444-595, gnl|panTro1|chr19_random (31155158-31155373) | |
| 444-595, gnl|rheMac2|chr16 (34342476-34342691) | |
| 444-595, gnl|rn3|chr10 (83730225-83730011) | |
| 444-595, gnl|tetNig1|chr2 (11383590-11383376) | |
| 444-595, gnl|xenTro1|scaffold_640 (200890-201087) |