Non-Coding RNA Search

Ss1.1-Utr1-UTR010039C12.5

Sequence:


               
               ACAGGTGCTTACTGCTGCCTCTGCACTCTCCCTGGAGCTACAGGAAATGGAGCCCCTGGG
GCTACCCCAGGCTTCCCCAACTCGCACCCGCTCCCCTGATGTCATCTCCTCAGCTTCCAC
TGCCCTATCCCAGGATATCCCTGAGATTGCGTCTGAAGCACTGTCCCGTGGCTTTGGTTC
CTCTGCTCCTGAGGGCCTAGAGCCAGACAGTATGGCCTCAGCTGCCTCAGCACTGCACCT
CCTGTCCCCACGGCCCCGGCCGGGGCCCGAGCTTGGTCCCCAGCTTAGCCTGGATGGAGG
CCCTGGGGATGGGGATCGGCATAGTGCCCCTTCCCTTCTGGAGGCAGCCTTGACCCAGGA
AACCACAGCCCCTGACAGTCAGGTCTGGCCCACGGCCCCAGACATTACTCGTGAGACCTG
CAGCAGCCTGGCAGAGAGCCCCAGGAATGGCCTCCAGGAAAAGCACAAGAGCCTGGCCTT
CCACCGACCACCTTATCACCTGCTACAGCAACATGACAGCCAGGATGCCAGTGCTGAGCA
AAGTGACCACGATGATGAGGTGGCCAGCCTTGCCTCTGCTGCAGGGGGCTTTGGCACCAA
CACCAGGTGAGTGGGCCAACACCCTTTCTGCTTCAGAGACTCCTGCCTGTGAGGGGTTGG
GATCTGGGCCATCCCCTGGTCTTGTGCGGGAGGATGGGTGGCGCAGGCATCACATGACTG
TTGCTACTGGCAGGTGGCAGAGACCCCTGAGGACTGGCCAGCTCTCATTTGGCAACAGCA
GAGAGAGCTGGCACAGCTGCGGCACAGCCAGGAAGAGCTGCTGCAGCGTCTGTGCACCCA
ACTTGAAGGCCTGCAGAGCACCGTCATGGGCCACGTGGAACGTGCCCTAGAGTCACGGCA
TGAGCAGGAGCAACGGCGACTGGAGCGGGCGCTGGCCGAGGGGCAGCAACGGGGTGGGCA
GCTGCAGGAGCAGCTGACGCAACAGCTGTCACAAGCGCTGTCTTCAGCTGTGGCTGGGCG
GCTGGAGCGCAGCATACGGGATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGGTGCTTACTGCTGCCTCTGCACTCTCCCTGGAGCTACAGGAAATGGAGCCCCTGGG
GCTACCCCAGGCTTCCCCAACTCGCACCCGCTCCCCTGATGTCATCTCCTCAGCTTCCAC
TGCCCTATCCCAGGATATCCCTGAGATTGCGTCTGAAGCACTGTCCCGTGGCTTTGGTTC
CTCTGCTCCTGAGGGCCTAGAGCCAGACAGTATGGCCTCAGCTGCCTCAGCACTGCACCT
CCTGTCCCCACGGCCCCGGCCGGGGCCCGAGCTTGGTCCCCAGCTTAGCCTGGATGGAGG
CCCTGGGGATGGGGATCGGCATAGTGCCCCTTCCCTTCTGGAGGCAGCCTTGACCCAGGA
AACCACAGCCCCTGACAGTCAGGTCTGGCCCACGGCCCCAGACATTACTCGTGAGACCTG
CAGCAGCCTGGCAGAGAGCCCCAGGAATGGCCTCCAGGAAAAGCACAAGAGCCTGGCCTT
CCACCGACCACCTTATCACCTGCTACAGCAACATGACAGCCAGGATGCCAGTGCTGAGCA
AAGTGACCACGATGATGAGGTGGCCAGCCTTGCCTCTGCTGCAGGGGGCTTTGGCACCAA
CACCAGGTGAGTGGGCCAACACCCTTTCTGCTTCAGAGACTCCTGCCTGTGAGGGGTTGG
GATCTGGGCCATCCCCTGGTCTTGTGCGGGAGGATGGGTGGCGCAGGCATCACATGACTG
TTGCTACTGGCAGGTGGCAGAGACCCCTGAGGACTGGCCAGCTCTCATTTGGCAACAGCA
GAGAGAGCTGGCACAGCTGCGGCACAGCCAGGAAGAGCTGCTGCAGCGTCTGTGCACCCA
ACTTGAAGGCCTGCAGAGCACCGTCATGGGCCACGTGGAACGTGCCCTAGAGTCACGGCA
TGAGCAGGAGCAACGGCGACTGGAGCGGGCGCTGGCCGAGGGGCAGCAACGGGGTGGGCA
GCTGCAGGAGCAGCTGACGCAACAGCTGTCACAAGCGCTGTCTTCAGCTGTGGCTGGGCG
GCTGGAGCGCAGCATACGGGATGA

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               41-357, - strand, RNAz p=0.997103
               

               
               739-858, - strand, RNAz p=0.894883
               

               
               914-1044, + strand, RNAz p=0.857405
               

               
               949-1044, - strand, RNAz p=0.783913

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-357, - strand, RNAz p=0.997103
               

               
               739-858, - strand, RNAz p=0.894883
               

               
               914-1044, + strand, RNAz p=0.857405
               

               
               949-1044, - strand, RNAz p=0.783913

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               132-328, + strand, RNAmicro p=1
               

               
               133-252, - strand, RNAmicro p=0.999853

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               132-328, + strand, RNAmicro p=1
               

               
               133-252, - strand, RNAmicro p=0.999853

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               144-357, BP170948 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|BP170948.1|), blast E-value=0, identity=100% 
               

               
               41-357, DA109077 BRACE3 Homo sapiens cDNA clone BRACE3025505 5', mRNA 
(dbj|DA109077.1|), blast E-value=0, identity=89.27% 
               

               
               41-357, DA145972 BRAMY2 Homo sapiens cDNA clone BRAMY2002611 5', mRNA 
(dbj|DA145972.1|), blast E-value=0, identity=89.27% 
               

               
               41-357, DA781075 OCBBF2 Homo sapiens cDNA clone OCBBF2016488 5', mRNA 
(dbj|DA781075.1|), blast E-value=0, identity=89.27% 
               

               
               41-357, DA949394 SPLEN2 Homo sapiens cDNA clone SPLEN2026072 5', mRNA 
(dbj|DA949394.1|), blast E-value=0, identity=89.27% 
               

               
               48-357, LIB38534_027_E10_T7_1 LIB38534 Canis familiaris cDNA clone 
(gb|DN382806.1|), blast E-value=0, identity=90.65%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               144-357, BP170948 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|BP170948.1|), blast E-value=0, identity=100% 
               

               
               41-357, DA109077 BRACE3 Homo sapiens cDNA clone BRACE3025505 5', mRNA 
(dbj|DA109077.1|), blast E-value=0, identity=89.27% 
               

               
               41-357, DA145972 BRAMY2 Homo sapiens cDNA clone BRAMY2002611 5', mRNA 
(dbj|DA145972.1|), blast E-value=0, identity=89.27% 
               

               
               41-357, DA781075 OCBBF2 Homo sapiens cDNA clone OCBBF2016488 5', mRNA 
(dbj|DA781075.1|), blast E-value=0, identity=89.27% 
               

               
               41-357, DA949394 SPLEN2 Homo sapiens cDNA clone SPLEN2026072 5', mRNA 
(dbj|DA949394.1|), blast E-value=0, identity=89.27% 
               

               
               48-357, LIB38534_027_E10_T7_1 LIB38534 Canis familiaris cDNA clone 
(gb|DN382806.1|), blast E-value=0, identity=90.65%

Aligned organism(s): 24 entry(ies)

More info

Aligned organism(s): 24 entry(ies)

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               2-438, gnl|bosTau2|chr18 (14979655-14979219)
               

               
               2-438, gnl|Hg17|chr16 (66471958-66472394)
               

               
               2-438, gnl|Mm7|chr8 (104487956-104488395)
               


               
               601-911, gnl|bosTau2|chr18 (14978670-14978350)
               

               
               601-911, gnl|Hg17|chr16 (66472932-66473249)
               

               
               601-911, gnl|Mm7|chr8 (104488947-104489272)
               


               
               914-1044, gnl|bosTau2|chr18 (14978241-14978111)
               

               
               914-1044, gnl|canFam2|chr5 (84612561-84612397)
               

               
               914-1044, gnl|danRer3|chr18 (20836901-20837064)
               

               
               914-1044, gnl|dasNov1|scaffold_126482 (5649-5813)
               

               
               914-1044, gnl|echTel1|scaffold_240554 (3242-3406)
               

               
               914-1044, gnl|fr1|chrUn (252125909-252126072)
               

               
               914-1044, gnl|galGal2|chr11 (922953-923116)
               

               
               914-1044, gnl|hg17|chr16 (66473356-66473520)
               

               
               914-1044, gnl|Hg17|chr16 (66473360-66473490)
               

               
               914-1044, gnl|loxAfr1|scaffold_24176 (17740-17904)
               

               
               914-1044, gnl|mm7|chr8 (104489375-104489539)
               

               
               914-1044, gnl|Mm7|chr8 (104489379-104489509)
               

               
               914-1044, gnl|monDom2|scaffold_23 (18355969-18355805)
               

               
               914-1044, gnl|oryCun1|scaffold_204307 (85875-85711)
               

               
               914-1044, gnl|panTro1|chr18 (60770303-60770467)
               

               
               914-1044, gnl|rn3|chr19 (35733649-35733813)
               

               
               914-1044, gnl|tetNig1|chrUn_random (18372722-18372559)
               

               
               914-1044, gnl|xenTro1|scaffold_145 (1488863-1489027)

Aligned organism(s): 24 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-438, gnl|bosTau2|chr18 (14979655-14979219)
               

               
               2-438, gnl|Hg17|chr16 (66471958-66472394)
               

               
               2-438, gnl|Mm7|chr8 (104487956-104488395)
               


               
               601-911, gnl|bosTau2|chr18 (14978670-14978350)
               

               
               601-911, gnl|Hg17|chr16 (66472932-66473249)
               

               
               601-911, gnl|Mm7|chr8 (104488947-104489272)
               


               
               914-1044, gnl|bosTau2|chr18 (14978241-14978111)
               

               
               914-1044, gnl|canFam2|chr5 (84612561-84612397)
               

               
               914-1044, gnl|danRer3|chr18 (20836901-20837064)
               

               
               914-1044, gnl|dasNov1|scaffold_126482 (5649-5813)
               

               
               914-1044, gnl|echTel1|scaffold_240554 (3242-3406)
               

               
               914-1044, gnl|fr1|chrUn (252125909-252126072)
               

               
               914-1044, gnl|galGal2|chr11 (922953-923116)
               

               
               914-1044, gnl|hg17|chr16 (66473356-66473520)
               

               
               914-1044, gnl|Hg17|chr16 (66473360-66473490)
               

               
               914-1044, gnl|loxAfr1|scaffold_24176 (17740-17904)
               

               
               914-1044, gnl|mm7|chr8 (104489375-104489539)
               

               
               914-1044, gnl|Mm7|chr8 (104489379-104489509)
               

               
               914-1044, gnl|monDom2|scaffold_23 (18355969-18355805)
               

               
               914-1044, gnl|oryCun1|scaffold_204307 (85875-85711)
               

               
               914-1044, gnl|panTro1|chr18 (60770303-60770467)
               

               
               914-1044, gnl|rn3|chr19 (35733649-35733813)
               

               
               914-1044, gnl|tetNig1|chrUn_random (18372722-18372559)
               

               
               914-1044, gnl|xenTro1|scaffold_145 (1488863-1489027)

	41-357, - strand, RNAz p=0.997103
	739-858, - strand, RNAz p=0.894883
	914-1044, + strand, RNAz p=0.857405
	949-1044, - strand, RNAz p=0.783913

	132-328, + strand, RNAmicro p=1
	133-252, - strand, RNAmicro p=0.999853

	144-357, BP170948 full-length enriched swine cDNA library, adult uterus Sus (dbj\|BP170948.1\|), blast E-value=0, identity=100%
	41-357, DA109077 BRACE3 Homo sapiens cDNA clone BRACE3025505 5', mRNA (dbj\|DA109077.1\|), blast E-value=0, identity=89.27%
	41-357, DA145972 BRAMY2 Homo sapiens cDNA clone BRAMY2002611 5', mRNA (dbj\|DA145972.1\|), blast E-value=0, identity=89.27%
	41-357, DA781075 OCBBF2 Homo sapiens cDNA clone OCBBF2016488 5', mRNA (dbj\|DA781075.1\|), blast E-value=0, identity=89.27%
	41-357, DA949394 SPLEN2 Homo sapiens cDNA clone SPLEN2026072 5', mRNA (dbj\|DA949394.1\|), blast E-value=0, identity=89.27%
	48-357, LIB38534_027_E10_T7_1 LIB38534 Canis familiaris cDNA clone (gb\|DN382806.1\|), blast E-value=0, identity=90.65%

	2-438, gnl\|bosTau2\|chr18 (14979655-14979219)
	2-438, gnl\|Hg17\|chr16 (66471958-66472394)
	2-438, gnl\|Mm7\|chr8 (104487956-104488395)

	601-911, gnl\|bosTau2\|chr18 (14978670-14978350)
	601-911, gnl\|Hg17\|chr16 (66472932-66473249)
	601-911, gnl\|Mm7\|chr8 (104488947-104489272)

	914-1044, gnl\|bosTau2\|chr18 (14978241-14978111)
	914-1044, gnl\|canFam2\|chr5 (84612561-84612397)
	914-1044, gnl\|danRer3\|chr18 (20836901-20837064)
	914-1044, gnl\|dasNov1\|scaffold_126482 (5649-5813)
	914-1044, gnl\|echTel1\|scaffold_240554 (3242-3406)
	914-1044, gnl\|fr1\|chrUn (252125909-252126072)
	914-1044, gnl\|galGal2\|chr11 (922953-923116)
	914-1044, gnl\|hg17\|chr16 (66473356-66473520)
	914-1044, gnl\|Hg17\|chr16 (66473360-66473490)
	914-1044, gnl\|loxAfr1\|scaffold_24176 (17740-17904)
	914-1044, gnl\|mm7\|chr8 (104489375-104489539)
	914-1044, gnl\|Mm7\|chr8 (104489379-104489509)
	914-1044, gnl\|monDom2\|scaffold_23 (18355969-18355805)
	914-1044, gnl\|oryCun1\|scaffold_204307 (85875-85711)
	914-1044, gnl\|panTro1\|chr18 (60770303-60770467)
	914-1044, gnl\|rn3\|chr19 (35733649-35733813)
	914-1044, gnl\|tetNig1\|chrUn_random (18372722-18372559)
	914-1044, gnl\|xenTro1\|scaffold_145 (1488863-1489027)