Non-Coding RNA Search

Ss1.1-Utr1-UTR010040C04.5

Sequence:


               
               TGTGTTCCTGCTCTGAAAAGGGGCGGAGGAGGAGCCACTTTGAATAAGTCTTCTCAGTGG
CGTCAATAGAGTTGACCCTCTGTCAAGTGTTTCTAATGTTTGGGGATGGGGGTGGGCTGT
GCCTTTTCTTTCAGCTGATGTCAATTTTGCATTGGAACTTACTGACCTGAGGCACAGGCA
TGGTTTCCACATCATTCTGGTCCATAAGAACCAGGCCTCCGAAGCCCTGCTGCATCATGC
TAACGAGCTGATCAGATTTGAAGAGTTCATTTCCGACCTGCCCCCCAGGTTACCACTAAA
AATGCCAGTAAGTGGGTTTGTGTCCTTACTGCTGTATTCCGCCATGAGGCCATGGAGGTG
CAAGACAGCCCTTAACAAGCGGCCTCCAAGCCCAGGTGAGGTTGTTGCTTGGCAATGGCT
GGCCAGCTTTTGAAAGAGGCCCGGAAACTTTCGGTTCTTCTCTTACAGATACCCAGAGAA
TTGATAGGTATGAGTTTTGCTTTTAGTTTTTCAAAATACCATAGGAAGTTGATTTTTAGA
TTTACGTTACTGACAACTACTGGCCAGTGTCTCCAGAACTAGCCGTGTCTTGTGTCAGGT
GGGTGGAGTTAATGGAATAAGAGTTGTTACTCTTTTCACTTCCAGGTTTTAGGGGGAAAG
TTGATGGTGATGGTGATGAAGTTCCCTCGTGGCCCAGTGGGTTAAGGACCTGGTGTGCTG
CGGCTCTGGTTATAACTATGATGCTGGCTTGATCCCTGGCCCCTGGGAACTTCCACAAGC
CGCGAGTGCAGCCAAAAAAAAAAATGAAATATGGTGATGGTTTGCACATACTTGGGGTGC
TTGGAGTCAAATGAGCAGTGTGGTGGGCCAGGTGTGGCGTTTAATCGTCAAGCTTCGGCA
GGCCTCTGAGCCTCTTGCCCGTGGCTGCAATCCCTGCCGTGCAGGGCACGGTGAGGAGTG
GTGGTCGCCACACCTGTAGCCTGTTAAGCCACTTGCTAGGCGAGTGTGCCCGTGTTTCCA
GCGGGAGGAGCGTTTCTGATTGTCTGGATTTAGAATAAGACTGTTTACCGCAACACTGAA
CTTGCATTTAAGCCGTTTGGGGAATGTATGTGTAATTCTTAAACAATAATAACAGAGAGC
GGCGTGGGTGGGCCAGGAGAATGGGCAGTCCCATTCAGGAAATGCAGTTTTGGGTTTTTT
GTTTTTTGAGGGGTTTTTTTTGGGCCACACTTGCGGCTCGAGGAAGTTCTCAGGCCCAAC
CCGAACCACACAGTGACCAGAGCTGCTGCAGTGACAATGCCGGATCCTTAACCTACTGTG
CCACAAGAGAACTCCCATGAAATGCAGTTTTTACGTGTTTTAACAACTTCAGAGCTACAA
AAGCACTTTAGGAATGACCTCCCGTAGTGTCTTCGTTTTAGGGAGAAGGGAGTCAGCAGT
TAGGGAAAGTAAGCAAGCCCCAGGAGGTCACACAGCCTGATTGTAGCAGAGCCAAGGCTG
GCTCTCAGTCTCCAGATTCAGGCACTTGCACTGCTGATGCCAGTGCCTCCCTGCTGCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGTTCCTGCTCTGAAAAGGGGCGGAGGAGGAGCCACTTTGAATAAGTCTTCTCAGTGG
CGTCAATAGAGTTGACCCTCTGTCAAGTGTTTCTAATGTTTGGGGATGGGGGTGGGCTGT
GCCTTTTCTTTCAGCTGATGTCAATTTTGCATTGGAACTTACTGACCTGAGGCACAGGCA
TGGTTTCCACATCATTCTGGTCCATAAGAACCAGGCCTCCGAAGCCCTGCTGCATCATGC
TAACGAGCTGATCAGATTTGAAGAGTTCATTTCCGACCTGCCCCCCAGGTTACCACTAAA
AATGCCAGTAAGTGGGTTTGTGTCCTTACTGCTGTATTCCGCCATGAGGCCATGGAGGTG
CAAGACAGCCCTTAACAAGCGGCCTCCAAGCCCAGGTGAGGTTGTTGCTTGGCAATGGCT
GGCCAGCTTTTGAAAGAGGCCCGGAAACTTTCGGTTCTTCTCTTACAGATACCCAGAGAA
TTGATAGGTATGAGTTTTGCTTTTAGTTTTTCAAAATACCATAGGAAGTTGATTTTTAGA
TTTACGTTACTGACAACTACTGGCCAGTGTCTCCAGAACTAGCCGTGTCTTGTGTCAGGT
GGGTGGAGTTAATGGAATAAGAGTTGTTACTCTTTTCACTTCCAGGTTTTAGGGGGAAAG
TTGATGGTGATGGTGATGAAGTTCCCTCGTGGCCCAGTGGGTTAAGGACCTGGTGTGCTG
CGGCTCTGGTTATAACTATGATGCTGGCTTGATCCCTGGCCCCTGGGAACTTCCACAAGC
CGCGAGTGCAGCCAAAAAAAAAAATGAAATATGGTGATGGTTTGCACATACTTGGGGTGC
TTGGAGTCAAATGAGCAGTGTGGTGGGCCAGGTGTGGCGTTTAATCGTCAAGCTTCGGCA
GGCCTCTGAGCCTCTTGCCCGTGGCTGCAATCCCTGCCGTGCAGGGCACGGTGAGGAGTG
GTGGTCGCCACACCTGTAGCCTGTTAAGCCACTTGCTAGGCGAGTGTGCCCGTGTTTCCA
GCGGGAGGAGCGTTTCTGATTGTCTGGATTTAGAATAAGACTGTTTACCGCAACACTGAA
CTTGCATTTAAGCCGTTTGGGGAATGTATGTGTAATTCTTAAACAATAATAACAGAGAGC
GGCGTGGGTGGGCCAGGAGAATGGGCAGTCCCATTCAGGAAATGCAGTTTTGGGTTTTTT
GTTTTTTGAGGGGTTTTTTTTGGGCCACACTTGCGGCTCGAGGAAGTTCTCAGGCCCAAC
CCGAACCACACAGTGACCAGAGCTGCTGCAGTGACAATGCCGGATCCTTAACCTACTGTG
CCACAAGAGAACTCCCATGAAATGCAGTTTTTACGTGTTTTAACAACTTCAGAGCTACAA
AAGCACTTTAGGAATGACCTCCCGTAGTGTCTTCGTTTTAGGGAGAAGGGAGTCAGCAGT
TAGGGAAAGTAAGCAAGCCCCAGGAGGTCACACAGCCTGATTGTAGCAGAGCCAAGGCTG
GCTCTCAGTCTCCAGATTCAGGCACTTGCACTGCTGATGCCAGTGCCTCCCTGCTGCCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               927-1034, + strand, RNAz p=0.866436

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               927-1034, + strand, RNAz p=0.866436

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               49-511, gnl|bosTau2|chr25 (16199489-16199029)
               

               
               49-511, gnl|Hg17|chr16 (15631951-15631498)
               


               
               817-1112, gnl|bosTau2|chr25 (16198580-16198285)
               

               
               817-1112, gnl|Hg17|chr16 (15631337-15631025)
               


               
               1338-1469, gnl|bosTau2|chr25 (16198021-16197890)
               

               
               1338-1469, gnl|Hg17|chr16 (15630948-15630816)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-511, gnl|bosTau2|chr25 (16199489-16199029)
               

               
               49-511, gnl|Hg17|chr16 (15631951-15631498)
               


               
               817-1112, gnl|bosTau2|chr25 (16198580-16198285)
               

               
               817-1112, gnl|Hg17|chr16 (15631337-15631025)
               


               
               1338-1469, gnl|bosTau2|chr25 (16198021-16197890)
               

               
               1338-1469, gnl|Hg17|chr16 (15630948-15630816)

	49-511, gnl\|bosTau2\|chr25 (16199489-16199029)
	49-511, gnl\|Hg17\|chr16 (15631951-15631498)

	817-1112, gnl\|bosTau2\|chr25 (16198580-16198285)
	817-1112, gnl\|Hg17\|chr16 (15631337-15631025)

	1338-1469, gnl\|bosTau2\|chr25 (16198021-16197890)
	1338-1469, gnl\|Hg17\|chr16 (15630948-15630816)