Non-Coding RNA Search

Ss1.1-Utr1-UTR010043D08.5

Sequence:


               
               GGTCATACTAGGACCACACCCACAGCGTACGGAGGTTCCCAGGCAAGGGGTCGAATTAGA
GCTGTAGCCACA------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
AAACAGCTCTTCGTTGGTCTCAACAACAGTAAGAAAGTACCCCTGGGTTATAAGTCCTCT
TCTCTGTTGTACCATTTTCTCTGCCACCTCCCTGACCCCCACCCCAAGCAGAGTCGGGAA
TCTCCCATGGCAGGAAAAAGCATCTTGCTCCCATCATCACCACAGTTGTGCTCCAGTCTG
TTTCCCTCATAAAGCTGGGCCTTTTGGATTTTCCCTGCCAACCTCCCTGTTGCTCCAGTT
CAGCAGAAAGAAATGTCGTCACCAGATGCTGCAACCCCATTTCTGTCCCTTTTTAGTGTT
TTTTGTTTTTTTTGTTTTTTTATTAAACTTGGAGCCAAACTACTTCAGCATCATGTAAAC
ACACTGGAGTAAGTTAACAGCTGCCTCTCTTTTAAAGTTGAGCCCGCTCAGAACTAAAAG
GGGAATGCTTTCAGGTTCTGCTCAAGTTTGCATGTGACAGCATCAAAGCTATTTTTAGGG
GAGTGATCACCGGCAAGAAGCTGAAAACGGCTGCTTTCAACTATAAACAGTGGAAAGAAA
AGATCATTTATGCACTGCTGCAGCCCTTGAGTCCATTTATACGGGAGACAAAGGGGTGTG
TAAATCTCTTCTTCAAAGTTATGCAGGCATCTCGTGCCTGTTCAGAGCCCCATCACCTCC
ACGGAGAAGAGTAATGTTAATTTAGCGCTTGGCTGCCTGGGCTCTGAGTTACACTAGATG
CGCTGATAATGGTGAATTGCATAAGGCTGCCCTTCCAGGTGTCCATTCTCAAAAGGAGGC
AAGGTATAGATGCTCCAGAGCATCCAGGAAACTTGTATTTCCTGTCGCTCGCAGAACTCG
AGGGACCACAGGAAATGAGAGTCAGGTGGTATCCACTTCGTGCTGCCGTGGAAGGACCCT
CGTGACTTCACCTTTCCGAATTAAACGTTCTTAGTCGCAAAATGAGGCTCCTGCCACCCG
CTCTGTAGACTTCATCAGGCTGGTGTTTTCACCCTTCGCTGAACCCCTACTCCGTGCCGA
CTGCCCCGAACGGCCATCGTCATCCCCCCCAGAGTTCACAGTCTGTCCACAGACACCAGT
AGATGACAATACAGGGTGGTAAGTGGAGGGGACAGCGTGGGAAAGCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCATACTAGGACCACACCCACAGCGTACGGAGGTTCCCAGGCAAGGGGTCGAATTAGA
GCTGTAGCCACA------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
AAACAGCTCTTCGTTGGTCTCAACAACAGTAAGAAAGTACCCCTGGGTTATAAGTCCTCT
TCTCTGTTGTACCATTTTCTCTGCCACCTCCCTGACCCCCACCCCAAGCAGAGTCGGGAA
TCTCCCATGGCAGGAAAAAGCATCTTGCTCCCATCATCACCACAGTTGTGCTCCAGTCTG
TTTCCCTCATAAAGCTGGGCCTTTTGGATTTTCCCTGCCAACCTCCCTGTTGCTCCAGTT
CAGCAGAAAGAAATGTCGTCACCAGATGCTGCAACCCCATTTCTGTCCCTTTTTAGTGTT
TTTTGTTTTTTTTGTTTTTTTATTAAACTTGGAGCCAAACTACTTCAGCATCATGTAAAC
ACACTGGAGTAAGTTAACAGCTGCCTCTCTTTTAAAGTTGAGCCCGCTCAGAACTAAAAG
GGGAATGCTTTCAGGTTCTGCTCAAGTTTGCATGTGACAGCATCAAAGCTATTTTTAGGG
GAGTGATCACCGGCAAGAAGCTGAAAACGGCTGCTTTCAACTATAAACAGTGGAAAGAAA
AGATCATTTATGCACTGCTGCAGCCCTTGAGTCCATTTATACGGGAGACAAAGGGGTGTG
TAAATCTCTTCTTCAAAGTTATGCAGGCATCTCGTGCCTGTTCAGAGCCCCATCACCTCC
ACGGAGAAGAGTAATGTTAATTTAGCGCTTGGCTGCCTGGGCTCTGAGTTACACTAGATG
CGCTGATAATGGTGAATTGCATAAGGCTGCCCTTCCAGGTGTCCATTCTCAAAAGGAGGC
AAGGTATAGATGCTCCAGAGCATCCAGGAAACTTGTATTTCCTGTCGCTCGCAGAACTCG
AGGGACCACAGGAAATGAGAGTCAGGTGGTATCCACTTCGTGCTGCCGTGGAAGGACCCT
CGTGACTTCACCTTTCCGAATTAAACGTTCTTAGTCGCAAAATGAGGCTCCTGCCACCCG
CTCTGTAGACTTCATCAGGCTGGTGTTTTCACCCTTCGCTGAACCCCTACTCCGTGCCGA
CTGCCCCGAACGGCCATCGTCATCCCCCCCAGAGTTCACAGTCTGTCCACAGACACCAGT
AGATGACAATACAGGGTGGTAAGTGGAGGGGACAGCGTGGGAAAGCCG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               366-471, - strand, RNAz p=0.846444
               

               
               547-661, - strand, RNAz p=0.723273

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               366-471, - strand, RNAz p=0.846444
               

               
               547-661, - strand, RNAz p=0.723273

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               123-968, gnl|bosTau2|chr10 (68491922-68492763)
               

               
               123-968, gnl|Hg17|chr14 (88840790-88839735)
               

               
               123-968, gnl|Mm7|chr12 (96801678-96800909)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               123-968, gnl|bosTau2|chr10 (68491922-68492763)
               

               
               123-968, gnl|Hg17|chr14 (88840790-88839735)
               

               
               123-968, gnl|Mm7|chr12 (96801678-96800909)

	366-471, - strand, RNAz p=0.846444
	547-661, - strand, RNAz p=0.723273

	123-968, gnl\|bosTau2\|chr10 (68491922-68492763)
	123-968, gnl\|Hg17\|chr14 (88840790-88839735)
	123-968, gnl\|Mm7\|chr12 (96801678-96800909)