Non-Coding RNA Search

Ss1.1-Utr1-UTR010046B12.5

Sequence:


               
               GCCAACAAATTCCCTAGCTCGTCTGCAGACTGGCGTGTCCCCGGACTGGGCCTGGAGAGC
CGAGGGGAGCCTCCTACCCCTCCCAGCCCAGCACCGGCTCCGGCTCTGGCTCCTGGTAGC
AGCGGTGGCAGCAGCGAGGGAAGCAGTGGGAGGGCAGCTGGGGACACCCCTGAGCGCAAG
GAGGCGGCTGGTACCGGCAAGAAGGTGAAGGTGCGGCCCCCGCCCTTGAAGAAGACCTTT
GACTCTGTGGACAACAGGGTCCTGTCAGAGGTGGACTTCGAGGAGCGCTTTGCTGAGCTG
CCTGAATTTCGGCCTGAAGAGGTGCTGCCCTCACCTACCCTGCAGTCTCTGGCCACCTCA
CCCCGGGCCATCCTGGGCTCCTATCGCAAGAAGAGGAAGAACTCCACAGACCTGGACTCG
GCCCCTGAGGACCCCACCTCACCCAAACGCAAGATGAGGAGACGCTCCAGCTGCAGCTCG
GAGCCCAACACCCCCAAGAGTGCCAAGTGCGAGGGGGACATCTTCACCTTTGACCGTACA
GGTACCGAAGCTGAGGACGTGCTCGGGGAGCTGGAATATGAGAAGGTGCCATACTCGTCA
CTGCGGCGCACCCTGGACCAGCGCCGGGCCCTGGTCATGCAGCTCTTCCAGGACCATGGC
TTCTTCCCATCAGCTCAGGCCACAGCAGCCTTCCAGGCCCGCTACGCAGACATCTTCCCC
TCCAAGGTCTGTCTGCAGCTGAAGATCCGTGAAGTGCGCCAGAAGATCATGCAGGCGGCC
ACTCCCACAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAACAAATTCCCTAGCTCGTCTGCAGACTGGCGTGTCCCCGGACTGGGCCTGGAGAGC
CGAGGGGAGCCTCCTACCCCTCCCAGCCCAGCACCGGCTCCGGCTCTGGCTCCTGGTAGC
AGCGGTGGCAGCAGCGAGGGAAGCAGTGGGAGGGCAGCTGGGGACACCCCTGAGCGCAAG
GAGGCGGCTGGTACCGGCAAGAAGGTGAAGGTGCGGCCCCCGCCCTTGAAGAAGACCTTT
GACTCTGTGGACAACAGGGTCCTGTCAGAGGTGGACTTCGAGGAGCGCTTTGCTGAGCTG
CCTGAATTTCGGCCTGAAGAGGTGCTGCCCTCACCTACCCTGCAGTCTCTGGCCACCTCA
CCCCGGGCCATCCTGGGCTCCTATCGCAAGAAGAGGAAGAACTCCACAGACCTGGACTCG
GCCCCTGAGGACCCCACCTCACCCAAACGCAAGATGAGGAGACGCTCCAGCTGCAGCTCG
GAGCCCAACACCCCCAAGAGTGCCAAGTGCGAGGGGGACATCTTCACCTTTGACCGTACA
GGTACCGAAGCTGAGGACGTGCTCGGGGAGCTGGAATATGAGAAGGTGCCATACTCGTCA
CTGCGGCGCACCCTGGACCAGCGCCGGGCCCTGGTCATGCAGCTCTTCCAGGACCATGGC
TTCTTCCCATCAGCTCAGGCCACAGCAGCCTTCCAGGCCCGCTACGCAGACATCTTCCCC
TCCAAGGTCTGTCTGCAGCTGAAGATCCGTGAAGTGCGCCAGAAGATCATGCAGGCGGCC
ACTCCCACAGAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.734444

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.734444

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               64-180, - strand, RNAmicro p=0.976139
               

               
               30-103, + strand, RNAmicro p=0.933779

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               64-180, - strand, RNAmicro p=0.976139
               

               
               30-103, + strand, RNAmicro p=0.933779

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-254, gnl|bosTau2|chr18 (45004674-45004927)
               

               
               1-254, gnl|Hg17|chr19 (47489584-47489828)
               

               
               1-254, gnl|Mm7|chr7 (22080472-22080722)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-254, gnl|bosTau2|chr18 (45004674-45004927)
               

               
               1-254, gnl|Hg17|chr19 (47489584-47489828)
               

               
               1-254, gnl|Mm7|chr7 (22080472-22080722)

	64-180, - strand, RNAmicro p=0.976139
	30-103, + strand, RNAmicro p=0.933779

	1-254, gnl\|bosTau2\|chr18 (45004674-45004927)
	1-254, gnl\|Hg17\|chr19 (47489584-47489828)
	1-254, gnl\|Mm7\|chr7 (22080472-22080722)