Non-Coding RNA Search

Ss1.1-Utr1-UTR010048E04.5

Sequence:


               
               ACACCGACAGCAAGCAGGAGCCGTGGCTCTGGTGCTGGGGTCTGGACGCGGTTCTTGCGG
ACCCCGCTTTCGAGGCGAGAGCAGGACTTTTTTGCCTGGATCAACGCAACTGCGGCGCTG
GTGCAGCAATAGGCTTTGGTGCTGCCGCGGAGCCGAATTTCACCGCCGCTGCCGCCTCCG
CGAAGCCCTGCAGCTCCTGCCGGTTCTGGGAGAGCGACTCTGAGAGTTTCTCCAGCAGGA
AGAGCTGGGACCCGTGGCCCGAAGCGGCGTGGGAGAGATCCTGCGGCCCATCCCTGACCT
GCCCCCACGTGGGCACTAGGGCTGAAAACTGGGGCCCCGCGCTGTCCCGGGTTGGGCTCA
GGCTTCGGAGCCGCAGGTGGAAGGAGAACAGCCCGGAGGAGTGGCTCTGAGGTGGCCAAG
TGAAAGTGTGAACACTCTGGGCATGGAGATTTAGTGTTTGTGGTGCCCACTTCGTGCCCT
GACTCCTTCACCTTACCTTTTTCTGCGTCTGTGAGGTCTACCAGGCTTCTTCTCTAGCCA
GCGAGTTCTGCGGTGGTGAGGCCTTCCTGGGCCCCTGATCCTGGCCGGCCATGGGGAGCA
CGCTGGGCTGCCACCGCTCCATCCCCCGGGACCCCTCAGACCTGTCCCATAGCCGCAAGT
TCAGTGCTGCCTGCAACTTCAGCAACATCCTGGTGAACCAGGAGCGGCTCAACATCAACA
CCGCCACGGAGGAGGAGCTGATGACCCTGCCTGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACCGACAGCAAGCAGGAGCCGTGGCTCTGGTGCTGGGGTCTGGACGCGGTTCTTGCGG
ACCCCGCTTTCGAGGCGAGAGCAGGACTTTTTTGCCTGGATCAACGCAACTGCGGCGCTG
GTGCAGCAATAGGCTTTGGTGCTGCCGCGGAGCCGAATTTCACCGCCGCTGCCGCCTCCG
CGAAGCCCTGCAGCTCCTGCCGGTTCTGGGAGAGCGACTCTGAGAGTTTCTCCAGCAGGA
AGAGCTGGGACCCGTGGCCCGAAGCGGCGTGGGAGAGATCCTGCGGCCCATCCCTGACCT
GCCCCCACGTGGGCACTAGGGCTGAAAACTGGGGCCCCGCGCTGTCCCGGGTTGGGCTCA
GGCTTCGGAGCCGCAGGTGGAAGGAGAACAGCCCGGAGGAGTGGCTCTGAGGTGGCCAAG
TGAAAGTGTGAACACTCTGGGCATGGAGATTTAGTGTTTGTGGTGCCCACTTCGTGCCCT
GACTCCTTCACCTTACCTTTTTCTGCGTCTGTGAGGTCTACCAGGCTTCTTCTCTAGCCA
GCGAGTTCTGCGGTGGTGAGGCCTTCCTGGGCCCCTGATCCTGGCCGGCCATGGGGAGCA
CGCTGGGCTGCCACCGCTCCATCCCCCGGGACCCCTCAGACCTGTCCCATAGCCGCAAGT
TCAGTGCTGCCTGCAACTTCAGCAACATCCTGGTGAACCAGGAGCGGCTCAACATCAACA
CCGCCACGGAGGAGGAGCTGATGACCCTGCCTGGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               80-196, - strand, RNAz p=0.992868

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-196, - strand, RNAz p=0.992868

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               156-285, - strand, RNAmicro p=0.999985
               

               
               169-275, + strand, RNAmicro p=0.977094

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               156-285, - strand, RNAmicro p=0.999985
               

               
               169-275, + strand, RNAmicro p=0.977094

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-317, gnl|bosTau2|chr4 (34037639-34037949)
               

               
               1-317, gnl|echTel1|scaffold_311691 (92282-91895)
               

               
               1-317, gnl|hg17|chr7 (35966009-35966408)
               

               
               1-317, gnl|Hg17|chr7 (35966116-35966452)
               

               
               1-317, gnl|mm7|chr9 (25364504-25364856)
               

               
               1-317, gnl|oryCun1|scaffold_196211 (126789-126377)
               

               
               1-317, gnl|panTro1|chr6 (37136040-37136427)
               

               
               1-317, gnl|rheMac2|chr3 (90073898-90073511)
               

               
               1-317, gnl|rn3|chr8 (25172512-25172865)
               


               
               410-756, gnl|bosTau2|chr4 (34038488-34038818)
               

               
               410-756, gnl|Hg17|chr7 (35966980-35967339)
               

               
               410-756, gnl|Mm7|chr9 (25365268-25365596)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-317, gnl|bosTau2|chr4 (34037639-34037949)
               

               
               1-317, gnl|echTel1|scaffold_311691 (92282-91895)
               

               
               1-317, gnl|hg17|chr7 (35966009-35966408)
               

               
               1-317, gnl|Hg17|chr7 (35966116-35966452)
               

               
               1-317, gnl|mm7|chr9 (25364504-25364856)
               

               
               1-317, gnl|oryCun1|scaffold_196211 (126789-126377)
               

               
               1-317, gnl|panTro1|chr6 (37136040-37136427)
               

               
               1-317, gnl|rheMac2|chr3 (90073898-90073511)
               

               
               1-317, gnl|rn3|chr8 (25172512-25172865)
               


               
               410-756, gnl|bosTau2|chr4 (34038488-34038818)
               

               
               410-756, gnl|Hg17|chr7 (35966980-35967339)
               

               
               410-756, gnl|Mm7|chr9 (25365268-25365596)

	156-285, - strand, RNAmicro p=0.999985
	169-275, + strand, RNAmicro p=0.977094

	1-317, gnl\|bosTau2\|chr4 (34037639-34037949)
	1-317, gnl\|echTel1\|scaffold_311691 (92282-91895)
	1-317, gnl\|hg17\|chr7 (35966009-35966408)
	1-317, gnl\|Hg17\|chr7 (35966116-35966452)
	1-317, gnl\|mm7\|chr9 (25364504-25364856)
	1-317, gnl\|oryCun1\|scaffold_196211 (126789-126377)
	1-317, gnl\|panTro1\|chr6 (37136040-37136427)
	1-317, gnl\|rheMac2\|chr3 (90073898-90073511)
	1-317, gnl\|rn3\|chr8 (25172512-25172865)

	410-756, gnl\|bosTau2\|chr4 (34038488-34038818)
	410-756, gnl\|Hg17\|chr7 (35966980-35967339)
	410-756, gnl\|Mm7\|chr9 (25365268-25365596)