Ss1.1-Utr1-UTR010055B09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCAGAGCCCTGACTGCAAAGACAGTGCCACGGCCGCCGGAGCCACTGCCACTGCCTCGG CCGGGGCCAGCGGCGGGCTCCAGCCGCACCAGCTGAGCACTTGTGATGGGGAGCTGGCTG TCACCCCCCTGCCAGAGGGGGACCTCCCCGGGCAGTTCACACGTGTCATGGGGAAAGTGT GCACACAGCAGGAGCGGCGGCTGGGACCCGCAGCGCTGCGCTCTCTCAGCGCCGCCCGCT CCGACGGCATGGCCCGCAGCCCGCGCTTCGGGCGTCCCCAACCTCGCTGAGAGTTGCCGC GGTCCCGGACCCGCGCTTGGGGCCCCGAGCCGCCGAGATGAACCGCTCCGAGTGGTGATC GCCGCTCGGGAATGCGGGTGTGAAGGGTCCGAGCTGCCGCCCAGCGGGGAAGAGACCCCC CCGGACGCCGGAAATCACCATCCCGAAGCCGCGAGAAGGGTGGGGGGGAAAGAGAGCATT CATTCAGTTTGTGTGCCTTGTGGGGAAAAATTTTTTTAATCGCTATTTTTTTAAAAAGAA ACATTTCCGTGCTACTGTCTGTCATCATCTCTGGGGGAAATCAGCCAGAATCACCGGAAC GTAACTGAAACCAGACGAGAGAGGCAGGAGCCGAGGCAATACCTGCAGCGTCCGGGCACC AGAGCCACCTTGGAACCGGAACGCGTCTCGGGCGGCCGCGGGGCTGCGGCTCCGCCAAAC TTTGGGGCGGGCGGGGCGGGCTGGGGCGCCCAGGGGGCTTTGTAGACCGAGGGCCGCCCC CTAACCATGATGTTTCGCGACCAGGTCGGGGTGCTGGCGGGCTGGTTTAAGGGCTGGAAC GAGTGCGAGCAGACTGTTGCTCTGCTGTCGCTGCTCAAGCGCGTGAGCCAGACCCAGGCC CGTTTCCTCCAGCTCTGCCTGGAGCACTCGCTGGCCGACTGCGCCGAGCTGCACGTCCTC GAAGGCGAGGCCCACAGTCCCGGAATCATTAAACCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCAGAGCCCTGACTGCAAAGACAGTGCCACGGCCGCCGGAGCCACTGCCACTGCCTCGG CCGGGGCCAGCGGCGGGCTCCAGCCGCACCAGCTGAGCACTTGTGATGGGGAGCTGGCTG TCACCCCCCTGCCAGAGGGGGACCTCCCCGGGCAGTTCACACGTGTCATGGGGAAAGTGT GCACACAGCAGGAGCGGCGGCTGGGACCCGCAGCGCTGCGCTCTCTCAGCGCCGCCCGCT CCGACGGCATGGCCCGCAGCCCGCGCTTCGGGCGTCCCCAACCTCGCTGAGAGTTGCCGC GGTCCCGGACCCGCGCTTGGGGCCCCGAGCCGCCGAGATGAACCGCTCCGAGTGGTGATC GCCGCTCGGGAATGCGGGTGTGAAGGGTCCGAGCTGCCGCCCAGCGGGGAAGAGACCCCC CCGGACGCCGGAAATCACCATCCCGAAGCCGCGAGAAGGGTGGGGGGGAAAGAGAGCATT CATTCAGTTTGTGTGCCTTGTGGGGAAAAATTTTTTTAATCGCTATTTTTTTAAAAAGAA ACATTTCCGTGCTACTGTCTGTCATCATCTCTGGGGGAAATCAGCCAGAATCACCGGAAC GTAACTGAAACCAGACGAGAGAGGCAGGAGCCGAGGCAATACCTGCAGCGTCCGGGCACC AGAGCCACCTTGGAACCGGAACGCGTCTCGGGCGGCCGCGGGGCTGCGGCTCCGCCAAAC TTTGGGGCGGGCGGGGCGGGCTGGGGCGCCCAGGGGGCTTTGTAGACCGAGGGCCGCCCC CTAACCATGATGTTTCGCGACCAGGTCGGGGTGCTGGCGGGCTGGTTTAAGGGCTGGAAC GAGTGCGAGCAGACTGTTGCTCTGCTGTCGCTGCTCAAGCGCGTGAGCCAGACCCAGGCC CGTTTCCTCCAGCTCTGCCTGGAGCACTCGCTGGCCGACTGCGCCGAGCTGCACGTCCTC GAAGGCGAGGCCCACAGTCCCGGAATCATTAAACCA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-116, - strand, RNAz p=0.620996 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-116, - strand, RNAz p=0.620996 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-177, gnl|bosTau2|chr10 (45874621-45874445) | |
| 1-177, gnl|canFam2|chr8 (33689755-33690093) | |
| 1-177, gnl|danRer3|chrNA (185178396-185178121) | |
| 1-177, gnl|dasNov1|scaffold_707 (29579-29226) | |
| 1-177, gnl|echTel1|scaffold_324859 (225644-225982) | |
| 1-177, gnl|fr1|chrUn (101793167-101793418) | |
| 1-177, gnl|galGal2|chr5 (53104332-53104033) | |
| 1-177, gnl|hg17|chr14 (54296627-54296965) | |
| 1-177, gnl|Hg17|chr14 (54296786-54296962) | |
| 1-177, gnl|loxAfr1|scaffold_85100 (1242-904) | |
| 1-177, gnl|mm7|chr14 (42394943-42395260) | |
| 1-177, gnl|Mm7|chr14 (42395078-42395257) | |
| 1-177, gnl|monDom2|scaffold_8 (87580959-87581261) | |
| 1-177, gnl|panTro1|chr15 (53747180-53747518) | |
| 1-177, gnl|rheMac2|chr7 (117782822-117783160) | |
| 1-177, gnl|rn3|chr15 (22935851-22936168) | |
| 1-177, gnl|tetNig1|chrUn_random (7014250-7014480) | |
| 1-177, gnl|xenTro1|scaffold_355 (463017-462724) | |
| 784-983, gnl|bosTau2|chr18 (45553472-45553274) | |
| 784-983, gnl|canFam2|chr1 (116765197-116764982) | |
| 784-983, gnl|danRer3|chrNA (185182873-185182650) | |
| 784-983, gnl|dasNov1|scaffold_1632 (147687-147473) | |
| 784-983, gnl|echTel1|scaffold_230983 (14254-14039) | |
| 784-983, gnl|fr1|chrUn (60128082-60127864) | |
| 784-983, gnl|galGal2|chr5 (53162515-53162306) | |
| 784-983, gnl|hg17|chr19 (44539362-44539577) | |
| 784-983, gnl|Hg17|chr19 (44539371-44539570) | |
| 784-983, gnl|loxAfr1|scaffold_31681 (12291-12506) | |
| 784-983, gnl|mm7|chr7 (25357543-25357328) | |
| 784-983, gnl|Mm7|chr7 (25357532-25357333) | |
| 784-983, gnl|monDom2|scaffold_139 (1009285-1009499) | |
| 784-983, gnl|oryCun1|scaffold_102062 (16220-16005) | |
| 784-983, gnl|panTro1|chr20 (41484281-41484496) | |
| 784-983, gnl|rheMac2|chr19 (45701763-45701978) | |
| 784-983, gnl|rn3|chr1 (83609707-83609492) | |
| 784-983, gnl|tetNig1|chr16 (3230973-3230766) | |
| 784-983, gnl|xenTro1|scaffold_423 (1113689-1113477) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-177, gnl|bosTau2|chr10 (45874621-45874445) | |
| 1-177, gnl|canFam2|chr8 (33689755-33690093) | |
| 1-177, gnl|danRer3|chrNA (185178396-185178121) | |
| 1-177, gnl|dasNov1|scaffold_707 (29579-29226) | |
| 1-177, gnl|echTel1|scaffold_324859 (225644-225982) | |
| 1-177, gnl|fr1|chrUn (101793167-101793418) | |
| 1-177, gnl|galGal2|chr5 (53104332-53104033) | |
| 1-177, gnl|hg17|chr14 (54296627-54296965) | |
| 1-177, gnl|Hg17|chr14 (54296786-54296962) | |
| 1-177, gnl|loxAfr1|scaffold_85100 (1242-904) | |
| 1-177, gnl|mm7|chr14 (42394943-42395260) | |
| 1-177, gnl|Mm7|chr14 (42395078-42395257) | |
| 1-177, gnl|monDom2|scaffold_8 (87580959-87581261) | |
| 1-177, gnl|panTro1|chr15 (53747180-53747518) | |
| 1-177, gnl|rheMac2|chr7 (117782822-117783160) | |
| 1-177, gnl|rn3|chr15 (22935851-22936168) | |
| 1-177, gnl|tetNig1|chrUn_random (7014250-7014480) | |
| 1-177, gnl|xenTro1|scaffold_355 (463017-462724) | |
| 784-983, gnl|bosTau2|chr18 (45553472-45553274) | |
| 784-983, gnl|canFam2|chr1 (116765197-116764982) | |
| 784-983, gnl|danRer3|chrNA (185182873-185182650) | |
| 784-983, gnl|dasNov1|scaffold_1632 (147687-147473) | |
| 784-983, gnl|echTel1|scaffold_230983 (14254-14039) | |
| 784-983, gnl|fr1|chrUn (60128082-60127864) | |
| 784-983, gnl|galGal2|chr5 (53162515-53162306) | |
| 784-983, gnl|hg17|chr19 (44539362-44539577) | |
| 784-983, gnl|Hg17|chr19 (44539371-44539570) | |
| 784-983, gnl|loxAfr1|scaffold_31681 (12291-12506) | |
| 784-983, gnl|mm7|chr7 (25357543-25357328) | |
| 784-983, gnl|Mm7|chr7 (25357532-25357333) | |
| 784-983, gnl|monDom2|scaffold_139 (1009285-1009499) | |
| 784-983, gnl|oryCun1|scaffold_102062 (16220-16005) | |
| 784-983, gnl|panTro1|chr20 (41484281-41484496) | |
| 784-983, gnl|rheMac2|chr19 (45701763-45701978) | |
| 784-983, gnl|rn3|chr1 (83609707-83609492) | |
| 784-983, gnl|tetNig1|chr16 (3230973-3230766) | |
| 784-983, gnl|xenTro1|scaffold_423 (1113689-1113477) |