Non-Coding RNA Search

Ss1.1-Utr1-UTR010060E07.5

Sequence:


               
               TTCCGGGCTGGAGCCAGCGACGCAAAGGGGGACGGGTTCTTCTTAAAAGAGAAACGGCGG
CGGCGTGCGCGAGGCCCTGGTGCTCATGGCTGCCTCTCTTGGGGACACCTCCCATAGGCG
GCGGGAGAAGAGGCGGCAGCTGGACGCCCGCCGCAGCAAGTGCCGTATCCGCCTGGGCGG
CCACATGGAGCAGTGGTGCCTCCTCAAGGAGCAGCTGGGCTTCTCACTGCACTCGCAGCT
GGCCAAGTTCCTGTTAGACCGGTATACTTCTTCAGGCTGCAGACTCTGTGCAGGTCCTGA
GCCTGTGCCCCCCAAAGGTCTGCAGTATCTAGTGCTCCTGTCTCATGCTCACAGCCGAGA
GTGCAGCCTGGTGCCTGGGCTGCGGGGACCTGGGGGTCAAAACGGGGGGCTTGTGTGGGA
GTGTTCGGCTGGCCACACCTTCTCCTGGGGCCCCTCTTCAGGCCCTACACCTCCAGAGGA
GCCCAGTCCAGTCCCGCTTCCAAGTACTGACCAGAGAAACTGGTGTCCAGAGGCTAGGAG
TGGACAGGAACCTGCAGGTTTGGAATCTGAGCACGATGACAGGACTCAGGAGGCCAACTT
AGCCAGAGGAGTGGAACCCCCACTGGAGACCTTCCCACCCATAGGAGAAGAGGATGGGGA
AGAGGAAGATGAGGATGAAGAGGAGATGCTCAGTGATGCCAGCCTATGGACCTACAGCTC
CTCCCCAGATGACAGTGAGCCAGATGCCCCCATACTACCCCCTTCCCCCGTCACCCATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCGGGCTGGAGCCAGCGACGCAAAGGGGGACGGGTTCTTCTTAAAAGAGAAACGGCGG
CGGCGTGCGCGAGGCCCTGGTGCTCATGGCTGCCTCTCTTGGGGACACCTCCCATAGGCG
GCGGGAGAAGAGGCGGCAGCTGGACGCCCGCCGCAGCAAGTGCCGTATCCGCCTGGGCGG
CCACATGGAGCAGTGGTGCCTCCTCAAGGAGCAGCTGGGCTTCTCACTGCACTCGCAGCT
GGCCAAGTTCCTGTTAGACCGGTATACTTCTTCAGGCTGCAGACTCTGTGCAGGTCCTGA
GCCTGTGCCCCCCAAAGGTCTGCAGTATCTAGTGCTCCTGTCTCATGCTCACAGCCGAGA
GTGCAGCCTGGTGCCTGGGCTGCGGGGACCTGGGGGTCAAAACGGGGGGCTTGTGTGGGA
GTGTTCGGCTGGCCACACCTTCTCCTGGGGCCCCTCTTCAGGCCCTACACCTCCAGAGGA
GCCCAGTCCAGTCCCGCTTCCAAGTACTGACCAGAGAAACTGGTGTCCAGAGGCTAGGAG
TGGACAGGAACCTGCAGGTTTGGAATCTGAGCACGATGACAGGACTCAGGAGGCCAACTT
AGCCAGAGGAGTGGAACCCCCACTGGAGACCTTCCCACCCATAGGAGAAGAGGATGGGGA
AGAGGAAGATGAGGATGAAGAGGAGATGCTCAGTGATGCCAGCCTATGGACCTACAGCTC
CTCCCCAGATGACAGTGAGCCAGATGCCCCCATACTACCCCCTTCCCCCGTCACCCATGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7TPN8_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7TPN8_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               604-732, - strand, RNAz p=0.929204

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               604-732, - strand, RNAz p=0.929204

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               72-263, gnl|bosTau2|chr7 (28856151-28855960)
               

               
               72-263, gnl|Hg17|chr1 (245362273-245362079)
               

               
               72-263, gnl|Mm7|chr11 (58389117-58389308)
               


               
               292-559, gnl|bosTau2|chr7 (28855369-28855102)
               

               
               292-559, gnl|Hg17|chr1 (245361449-245361182)
               

               
               292-559, gnl|Mm7|chr11 (58390338-58390605)
               


               
               604-732, gnl|bosTau2|chr7 (28854415-28854290)
               

               
               604-732, gnl|Hg17|chr1 (245360375-245360238)
               

               
               604-732, gnl|Mm7|chr11 (58391070-58391210)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               72-263, gnl|bosTau2|chr7 (28856151-28855960)
               

               
               72-263, gnl|Hg17|chr1 (245362273-245362079)
               

               
               72-263, gnl|Mm7|chr11 (58389117-58389308)
               


               
               292-559, gnl|bosTau2|chr7 (28855369-28855102)
               

               
               292-559, gnl|Hg17|chr1 (245361449-245361182)
               

               
               292-559, gnl|Mm7|chr11 (58390338-58390605)
               


               
               604-732, gnl|bosTau2|chr7 (28854415-28854290)
               

               
               604-732, gnl|Hg17|chr1 (245360375-245360238)
               

               
               604-732, gnl|Mm7|chr11 (58391070-58391210)

	72-263, gnl\|bosTau2\|chr7 (28856151-28855960)
	72-263, gnl\|Hg17\|chr1 (245362273-245362079)
	72-263, gnl\|Mm7\|chr11 (58389117-58389308)

	292-559, gnl\|bosTau2\|chr7 (28855369-28855102)
	292-559, gnl\|Hg17\|chr1 (245361449-245361182)
	292-559, gnl\|Mm7\|chr11 (58390338-58390605)

	604-732, gnl\|bosTau2\|chr7 (28854415-28854290)
	604-732, gnl\|Hg17\|chr1 (245360375-245360238)
	604-732, gnl\|Mm7\|chr11 (58391070-58391210)