Non-Coding RNA Search

Ss1.1-Utr1-UTR010062F05.5

Sequence:


               
               CAAATATGAATGACAATATTTTTGAATAGTGAAATGAAATAAATTTTATTCTTTCATTGA
CATTCTCCTGTCTTCCCCTTCAAAGAGGAAAAATAAATGGAACATGTTTGAAAGCCTAAT
CTTTTTAAATTTTTCTTTCCTTTATTTAGCCATGCCTGCAGCATGTGGATCTTCCTAGCC
AGGGAGTGACCACAGCAGTGACCAAGCTGAGTCCTTAACCACTAGGAACTCCAAGGCCAA
TCTTTCTAAAATGCAAATCTCACTGTGCTCTTCTGCTTAAATACCTCAGCACCCACTTTC
CCCAGAGGCTGAGTCCCCTCAGCACCCACTTTCCCCAGAGGCTGAGTCCTTCGTCTCAGT
GGAGCCTGTCCCTGCAGGACCCCTCCTCACTCCAGCCTCTCCCCCATCAAACCCCCACCT
CACCCCTATACACTTGGACTTGCTTGGACTTTCCTGCCTTCGCTTTCGTGTTGTCTATTT
CTCCCTCCTGGACCACTTCTTCACTGTGTCTGTGCATCTCTTGAGCCTCAGCCCCCGCAT
CGGGATGCTGACTCTGCATCCCAAGGCTGCCTGGGCTTCTCCTGGCTTGCTGCTTCTCTT
AGGACCTTTCCGCAGCTCCTGTACTGACCTGGAGGAATGTGCTTTGCTGTGGGTGTTTCG
GTCTGTTTGTTTCAGAACAAAATTGTGCCCCTTCTCCTCCAGGAGAGGTGCTGGAAGGTG
ATGGCCCTGCCTCAACATCAGCCA------------------------------------
------------------------------------------------------------
------------------------------------GGCTCAGACCCCCATGTTGTTTGG
GGCTGGGGCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAATATGAATGACAATATTTTTGAATAGTGAAATGAAATAAATTTTATTCTTTCATTGA
CATTCTCCTGTCTTCCCCTTCAAAGAGGAAAAATAAATGGAACATGTTTGAAAGCCTAAT
CTTTTTAAATTTTTCTTTCCTTTATTTAGCCATGCCTGCAGCATGTGGATCTTCCTAGCC
AGGGAGTGACCACAGCAGTGACCAAGCTGAGTCCTTAACCACTAGGAACTCCAAGGCCAA
TCTTTCTAAAATGCAAATCTCACTGTGCTCTTCTGCTTAAATACCTCAGCACCCACTTTC
CCCAGAGGCTGAGTCCCCTCAGCACCCACTTTCCCCAGAGGCTGAGTCCTTCGTCTCAGT
GGAGCCTGTCCCTGCAGGACCCCTCCTCACTCCAGCCTCTCCCCCATCAAACCCCCACCT
CACCCCTATACACTTGGACTTGCTTGGACTTTCCTGCCTTCGCTTTCGTGTTGTCTATTT
CTCCCTCCTGGACCACTTCTTCACTGTGTCTGTGCATCTCTTGAGCCTCAGCCCCCGCAT
CGGGATGCTGACTCTGCATCCCAAGGCTGCCTGGGCTTCTCCTGGCTTGCTGCTTCTCTT
AGGACCTTTCCGCAGCTCCTGTACTGACCTGGAGGAATGTGCTTTGCTGTGGGTGTTTCG
GTCTGTTTGTTTCAGAACAAAATTGTGCCCCTTCTCCTCCAGGAGAGGTGCTGGAAGGTG
ATGGCCCTGCCTCAACATCAGCCA------------------------------------
------------------------------------------------------------
------------------------------------GGCTCAGACCCCCATGTTGTTTGG
GGCTGGGGCTCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               329-443, - strand, RNAz p=0.997907
               

               
               591-705, + strand, RNAz p=0.970579

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               329-443, - strand, RNAz p=0.997907
               

               
               591-705, + strand, RNAz p=0.970579

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               7-129, gnl|bosTau2|chr12 (29232638-29232760)
               

               
               7-129, gnl|Hg17|chr10 (35138820-35138683)
               


               
               329-734, gnl|bosTau2|chr12 (29232806-29233184)
               

               
               329-734, gnl|Hg17|chr10 (35138638-35138247)
               

               
               329-734, gnl|Mm7|chr8 (125659282-125659635)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-129, gnl|bosTau2|chr12 (29232638-29232760)
               

               
               7-129, gnl|Hg17|chr10 (35138820-35138683)
               


               
               329-734, gnl|bosTau2|chr12 (29232806-29233184)
               

               
               329-734, gnl|Hg17|chr10 (35138638-35138247)
               

               
               329-734, gnl|Mm7|chr8 (125659282-125659635)

	329-443, - strand, RNAz p=0.997907
	591-705, + strand, RNAz p=0.970579

	7-129, gnl\|bosTau2\|chr12 (29232638-29232760)
	7-129, gnl\|Hg17\|chr10 (35138820-35138683)

	329-734, gnl\|bosTau2\|chr12 (29232806-29233184)
	329-734, gnl\|Hg17\|chr10 (35138638-35138247)
	329-734, gnl\|Mm7\|chr8 (125659282-125659635)