Non-Coding RNA Search

Ss1.1-Utr1-UTR010066E03.5

Sequence:


               
               CGAGTGGGGCAGGACGCGCGCAGCCAGCCCGCCCGCCCGGAGACCCGCAAGGAGTGGCAT
TCGTCGGAAGAGTTTGTGAAACCTTCTCTGCCCGGAGCTCCAGGACCAATGCATCTTTCC
ACCACCTTGAACCACTGAGCAGTGCAGAGCCCCAGTTTCAGAAGACTTGTCCTGCCGCCA
CCATGAGCTCTGAATGCGATGTGGGTGCTTCCAAGGCCGTGGTGAATGGACTGGCACTGG
GCAGCAACGGGCGAGACAAAGACACGGATCCTACAAAAATCTGCACCGGGAAGGGAGCCG
TGACTCTCCGGGCCTCGTCCTCTTACCGGGAAATCCCGAGCGGCAGCCCCGTGAGCCCCC
GTGAAGCCCCGCAGCAGGAGAGAAAAGCAGATGAGTGGAGGCTTCCTTCCCATGCTGATG
CCAATGGAAATGCCCAACCCTCTTCACTGGCTGCCAAGGGCTACAGAAGCGTGCACCCCA
GCTTTCCTTCTGACAAGCCCCAGGTAGGCCTGTGTGCAAGGCTGGGGAGGGGGTGGGGAC
TGTTCTGGAGTCTCTTAGCTGGCACTTGGGGCTTCCTGTTCGCCCGGCTGGAGAGCTGGG
CCCGGTTCTGAGTTGCACTTTTGGCCAGCTCTGGAAAAGCTCCAGGAGCACCAGAATGAG
GGAGAAGGTGGGGTCAGGGGAAGCGGAGGCATGGGATGAGACTCTTCTGTACCAGGGTTT
CAGAAATACAAGCCCCGTATTTCCTAGGTTTGAAACGCATGTGGAAATGTCCTGAAAGAG
GGAATGGCAGGTTGGAAAAAAGTCTGAGCCTGTTTGATAAAGACTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGTGGGGCAGGACGCGCGCAGCCAGCCCGCCCGCCCGGAGACCCGCAAGGAGTGGCAT
TCGTCGGAAGAGTTTGTGAAACCTTCTCTGCCCGGAGCTCCAGGACCAATGCATCTTTCC
ACCACCTTGAACCACTGAGCAGTGCAGAGCCCCAGTTTCAGAAGACTTGTCCTGCCGCCA
CCATGAGCTCTGAATGCGATGTGGGTGCTTCCAAGGCCGTGGTGAATGGACTGGCACTGG
GCAGCAACGGGCGAGACAAAGACACGGATCCTACAAAAATCTGCACCGGGAAGGGAGCCG
TGACTCTCCGGGCCTCGTCCTCTTACCGGGAAATCCCGAGCGGCAGCCCCGTGAGCCCCC
GTGAAGCCCCGCAGCAGGAGAGAAAAGCAGATGAGTGGAGGCTTCCTTCCCATGCTGATG
CCAATGGAAATGCCCAACCCTCTTCACTGGCTGCCAAGGGCTACAGAAGCGTGCACCCCA
GCTTTCCTTCTGACAAGCCCCAGGTAGGCCTGTGTGCAAGGCTGGGGAGGGGGTGGGGAC
TGTTCTGGAGTCTCTTAGCTGGCACTTGGGGCTTCCTGTTCGCCCGGCTGGAGAGCTGGG
CCCGGTTCTGAGTTGCACTTTTGGCCAGCTCTGGAAAAGCTCCAGGAGCACCAGAATGAG
GGAGAAGGTGGGGTCAGGGGAAGCGGAGGCATGGGATGAGACTCTTCTGTACCAGGGTTT
CAGAAATACAAGCCCCGTATTTCCTAGGTTTGAAACGCATGTGGAAATGTCCTGAAAGAG
GGAATGGCAGGTTGGAAAAAAGTCTGAGCCTGTTTGATAAAGACTCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               427-538, - strand, RNAz p=0.711167

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               427-538, - strand, RNAz p=0.711167

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               428-566, - strand, RNAmicro p=0.999228
               

               
               433-527, + strand, RNAmicro p=0.990841

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               428-566, - strand, RNAmicro p=0.999228
               

               
               433-527, + strand, RNAmicro p=0.990841

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               388-808, gnl|bosTau2|chr26 (10793809-10794222)
               

               
               388-808, gnl|Hg17|chr10 (97171823-97171363)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               388-808, gnl|bosTau2|chr26 (10793809-10794222)
               

               
               388-808, gnl|Hg17|chr10 (97171823-97171363)

	428-566, - strand, RNAmicro p=0.999228
	433-527, + strand, RNAmicro p=0.990841

	388-808, gnl\|bosTau2\|chr26 (10793809-10794222)
	388-808, gnl\|Hg17\|chr10 (97171823-97171363)