Non-Coding RNA Search

Ss1.1-Utr1-UTR010066F05.5

Sequence:


               
               TGGAAAACATGGCTGCGCTGGAAACTCTACTGCTTTGGGCGCTGGGAGCAGGCGGTACCC
CACGAATGAGAAAATTGACGATGTGTTTTGCGTAATTCATCTCTTTCTGTCTCCCTGCAC
TCTGTGCTGGGAAAATGCATCATCCATTTGGAAAAGAGGAAACTGCTTCTCAGAAGCAGC
TTTTTGGATTTTTTTGTGAGTGCCTTCGGAGAGGAGAATGGGAGCTGGCACAGGCGTGTG
TACCTCAGCTGCACGAGGCACAAGGGGATATCCCAAAGAAGGTGGAAGATATACTTCGGG
CGCTGGTCGTATGTCCAAATCAGCTGAGATGTGGACAGGACATCAACCCTCAAAGATTAG
CCTGGATCTGGCTTCTTGTACTGGAAAAATGGTTGGCCCTGGAGAAGAAGTCACTCCCAA
CTGTTTTCCGGAGGAAGCTTGAGTTTCTTTTATTGTCAGAGGACCTCCCAGGTGGTATCC
CAGAGGACATCCTCAAGGACCTGTATGCAGTCTTAGCCCAAGACACAGTCGACCCTGTGC
TTGACAGAAATCAGAGGCAGGAGAGCTGGCCACCTTGGCTCAACTCGGAAGCTGTCTCTG
TGCTCTGGGATCTCCTGAGGCAGGCCCCCCAGCCCGCACAGGCCCTGCTGGAGCTCCTGC
TTGGGGAGGATGACGGCACAGGCCTCCGTGGCTGGCCTCTGCAAAAGGCGCTGGTGGACC
TCATTCGAAAGGCACTGCGAGCTCTGCGGGGCCCTGATGCTGGGCCCACGGGGGTAGAGG
ATGCCATCTATGGAGCCCTGCGGACTCTGCGATGCCCTGCAGAGCCGCTGGGGGTTGAGC
TGCGCCTCCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAAAACATGGCTGCGCTGGAAACTCTACTGCTTTGGGCGCTGGGAGCAGGCGGTACCC
CACGAATGAGAAAATTGACGATGTGTTTTGCGTAATTCATCTCTTTCTGTCTCCCTGCAC
TCTGTGCTGGGAAAATGCATCATCCATTTGGAAAAGAGGAAACTGCTTCTCAGAAGCAGC
TTTTTGGATTTTTTTGTGAGTGCCTTCGGAGAGGAGAATGGGAGCTGGCACAGGCGTGTG
TACCTCAGCTGCACGAGGCACAAGGGGATATCCCAAAGAAGGTGGAAGATATACTTCGGG
CGCTGGTCGTATGTCCAAATCAGCTGAGATGTGGACAGGACATCAACCCTCAAAGATTAG
CCTGGATCTGGCTTCTTGTACTGGAAAAATGGTTGGCCCTGGAGAAGAAGTCACTCCCAA
CTGTTTTCCGGAGGAAGCTTGAGTTTCTTTTATTGTCAGAGGACCTCCCAGGTGGTATCC
CAGAGGACATCCTCAAGGACCTGTATGCAGTCTTAGCCCAAGACACAGTCGACCCTGTGC
TTGACAGAAATCAGAGGCAGGAGAGCTGGCCACCTTGGCTCAACTCGGAAGCTGTCTCTG
TGCTCTGGGATCTCCTGAGGCAGGCCCCCCAGCCCGCACAGGCCCTGCTGGAGCTCCTGC
TTGGGGAGGATGACGGCACAGGCCTCCGTGGCTGGCCTCTGCAAAAGGCGCTGGTGGACC
TCATTCGAAAGGCACTGCGAGCTCTGCGGGGCCCTGATGCTGGGCCCACGGGGGTAGAGG
ATGCCATCTATGGAGCCCTGCGGACTCTGCGATGCCCTGCAGAGCCGCTGGGGGTTGAGC
TGCGCCTCCTGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61843837|ref|XP_601678.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61843837|ref|XP_601678.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               90-328, - strand, RNAz p=0.956226

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               90-328, - strand, RNAz p=0.956226

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               50-328, gnl|bosTau2|chr10 (53777545-53777266)
               

               
               50-328, gnl|Hg17|chr14 (67352518-67352240)
               

               
               50-328, gnl|Mm7|chr12 (77256848-77256569)
               


               
               496-852, gnl|bosTau2|chr10 (53770454-53770098)
               

               
               496-852, gnl|Hg17|chr14 (67344392-67344036)
               

               
               496-852, gnl|Mm7|chr12 (77248893-77248555)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-328, gnl|bosTau2|chr10 (53777545-53777266)
               

               
               50-328, gnl|Hg17|chr14 (67352518-67352240)
               

               
               50-328, gnl|Mm7|chr12 (77256848-77256569)
               


               
               496-852, gnl|bosTau2|chr10 (53770454-53770098)
               

               
               496-852, gnl|Hg17|chr14 (67344392-67344036)
               

               
               496-852, gnl|Mm7|chr12 (77248893-77248555)

	50-328, gnl\|bosTau2\|chr10 (53777545-53777266)
	50-328, gnl\|Hg17\|chr14 (67352518-67352240)
	50-328, gnl\|Mm7\|chr12 (77256848-77256569)

	496-852, gnl\|bosTau2\|chr10 (53770454-53770098)
	496-852, gnl\|Hg17\|chr14 (67344392-67344036)
	496-852, gnl\|Mm7\|chr12 (77248893-77248555)