Non-Coding RNA Search

Ss1.1-Utr1-UTR010070G01.5

Sequence:


               
               CAAAGCAAATCAAGAATTATGCTCTGGGTATTATTCTTCAACTCGAAGTTATAAAGTCAG
TTTGAAACGTTCAGATGAGTTATGCTCCTCTGACCTTTTTTGGACTATTTCTATGTAATT
CTCTTCTAGATCTAAAGGAAAGGAAAACGAAAGATTTGAAAAGTGAGGAGATGTCTCCAA
GTGTCAGAGTTTGATAGGACAGTATAAATTTGAATTGGCAAATGCTGTATCCACACATTT
GGAGTTTTTTGAACTGTATGGAACATTTGCAAATGTGAGTTTTTAAAATGTTCACGAACA
GAATTTTAGTAGAGTGGGAAAGCCGAAGACATTAAGATCGTAGCGAGTACAAATACTTTC
TAATTTAGACGGAATTATGTATTCCCCCAATTAAAGAAGATGGTCTTTTTCTCATTGGAT
GTGCTGTTCAAAGGGAAACGTTCGCAGAGATAAGTTGTGTGATCTATGTTAGGAGTAGAA
GAGTGCTCCTGGAAAATAGTATGTAGATCACATTTAAAAACTGAAAACATTTAAACTACT
TGGAATTAAAACTATTGGCTTTAAACAGTGTATTTATCCAGTGGGATACTTTAACTCACG
AACTTCCTGCATAGTATTCATTCACGAGCACATTGGTTCCCTTACAAAGTTCATTGATAC
CACAGTTTTGATACACAGTTTTGAAAGTGATTGAGGTGAGGTGCGGAAGAGTGGCTCTCA
AACTTGAACCTGCATCACAGTCACCCGACGGGTTTGTGAAATAGAGATGGGTGGGCCCAG
CCCCTCCAGCTTCTGATTCAGTGGGTCCAAGGTGGGGCCGGTAATGTGCATTGTAACAAA
TTTCCAGGTGATGCTGCTGCTGCTGCTGCTGCTGGTCTGGGACCACACATGAGAACCACT
GGTCTAGACTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGCAAATCAAGAATTATGCTCTGGGTATTATTCTTCAACTCGAAGTTATAAAGTCAG
TTTGAAACGTTCAGATGAGTTATGCTCCTCTGACCTTTTTTGGACTATTTCTATGTAATT
CTCTTCTAGATCTAAAGGAAAGGAAAACGAAAGATTTGAAAAGTGAGGAGATGTCTCCAA
GTGTCAGAGTTTGATAGGACAGTATAAATTTGAATTGGCAAATGCTGTATCCACACATTT
GGAGTTTTTTGAACTGTATGGAACATTTGCAAATGTGAGTTTTTAAAATGTTCACGAACA
GAATTTTAGTAGAGTGGGAAAGCCGAAGACATTAAGATCGTAGCGAGTACAAATACTTTC
TAATTTAGACGGAATTATGTATTCCCCCAATTAAAGAAGATGGTCTTTTTCTCATTGGAT
GTGCTGTTCAAAGGGAAACGTTCGCAGAGATAAGTTGTGTGATCTATGTTAGGAGTAGAA
GAGTGCTCCTGGAAAATAGTATGTAGATCACATTTAAAAACTGAAAACATTTAAACTACT
TGGAATTAAAACTATTGGCTTTAAACAGTGTATTTATCCAGTGGGATACTTTAACTCACG
AACTTCCTGCATAGTATTCATTCACGAGCACATTGGTTCCCTTACAAAGTTCATTGATAC
CACAGTTTTGATACACAGTTTTGAAAGTGATTGAGGTGAGGTGCGGAAGAGTGGCTCTCA
AACTTGAACCTGCATCACAGTCACCCGACGGGTTTGTGAAATAGAGATGGGTGGGCCCAG
CCCCTCCAGCTTCTGATTCAGTGGGTCCAAGGTGGGGCCGGTAATGTGCATTGTAACAAA
TTTCCAGGTGATGCTGCTGCTGCTGCTGCTGCTGGTCTGGGACCACACATGAGAACCACT
GGTCTAGACTAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q16861_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q16861_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               75-314, + strand, RNAz p=0.982794

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               75-314, + strand, RNAz p=0.982794

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               202-298, + strand, RNAmicro p=0.965173
               

               
               201-327, - strand, RNAmicro p=0.933075

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               202-298, + strand, RNAmicro p=0.965173
               

               
               201-327, - strand, RNAmicro p=0.933075

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-515, gnl|bosTau2|chr14 (4383315-4383831)
               

               
               1-515, gnl|Hg17|chr8 (133864514-133865024)
               


               
               530-752, gnl|bosTau2|chr14 (4385674-4385883)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-515, gnl|bosTau2|chr14 (4383315-4383831)
               

               
               1-515, gnl|Hg17|chr8 (133864514-133865024)
               


               
               530-752, gnl|bosTau2|chr14 (4385674-4385883)

	202-298, + strand, RNAmicro p=0.965173
	201-327, - strand, RNAmicro p=0.933075

	1-515, gnl\|bosTau2\|chr14 (4383315-4383831)
	1-515, gnl\|Hg17\|chr8 (133864514-133865024)

	530-752, gnl\|bosTau2\|chr14 (4385674-4385883)