Non-Coding RNA Search

Ss1.1-Utr1-UTR010074H01.5

Sequence:


               
               ACTTTGGTTTTAAGATGGAGCTTGGCATGCTCACCCCCCCCCCCCAGAGGAGGGATTTCA
GGGGATTCAAGGGTGTGAAAGTGAAATGGAGCAGGGACTTGGCAGAAAGCAGGCAAGGTG
GTTATGGAACTTTTAAAGCAAGCATTGCCAGCCTCAGCCTTGTAAATACCTTCTGGGTTA
GATCGACAGACAAGAATTAACAGCAGTGCAGCTATCATCAGCTTTGTCTGTTTAGTCTTA
CAGAACCAGGCCAGAGCATCTGGATTAGTTTAAAAAAAAAAAAAACTGATTTATAGCCCC
TTTCAATCATGATGGTAGCAAATATTTGGCCAGTGTTTTCCCAGTACTGCTCTCTGTGTG
ACCTCCATGTCTGCCCCATTTTATAGATGAGGAAACTGAGGTTTAGGAAGATTGAGTGAT
GCAACCAAGGCCACTTGGTTAAAATGAGCCAGAATTATGATTCAAACAAGAATATCTCAT
CCTGAAGCCATAAGATGCCCCTACTCTTATGTCCAAGATAAAATGAAATTCTGGGAAATG
AAATGACGCCAGGGAACTTGTCAGGATCACCTGAATTGCTTGCAGGTGGCAATATTAAGT
ATTTGACAACAATTTGTCCTTGTTGATGGGTTAAACAACTTCACATCTTTGAGCTCATTC
AATAGTCACAGTCCCATGGATGGTGAGGCGCAGAGAGCCTGGCACATAGTAAACACTCAG
GACATGTCAGCTGTTCTTATCACAATTTCCTGGTTGGCCCCAATTTTCTACATTTTTTTC
CCCAGAAACCATTCAGCTATTTCCTAGAGAGGAGTAAGGATTGAAAGCATGGGTTCTGCT
GGGAGTTCCCTGGTGGCTCAGTGGGGTTAAGGACCTGGCATTGACACTGCAGTGGCTCTG
GTTATTGCTGTGGCTAGGGTTCAATCCCTGGCCTGGAAGCTTCTGCATACTGCAGGTGCA
GCCAAAAAAAAAAAAAAAAAAAAAAAAAAAGCAACAGAGTGTCTGTGAAAACCACCCAGC
CTTCCTCTAGCTGTGAGACCTTGGAAGAGTCACTCAGCCTCTCGGTGCCAAACTTGCATC
CCTTGATAAAAGAGGATAGTAATGCCTACATCATAGGTATTGAGTTAACATATGTATAGT
GCTTAGAACAAGGACTGGCATATACTAAGTGCTGTATACGTGTTAGCATTCCGACTTTCT
TAGGATGCCTCTTATACCCGGAAGAAACCCAAAACTCTGTGCCTGACCCTTTGTCATGGT
GTGGGGTCTGGAAAATATGGAACCTATTTGTAGGTAGGGCCAAGATAAATGCCTCCCACA
CCTACCTCCAAGTGGGTAGGTTGATAAGTGGGGTCCTGTTAACTCAGGCTAGGGAATGGC
CCCTTCCTGAGGCTCCAGGGCCAGAAGCCCACAGCTGTCTCCAAGATAGCAGAGGTTCAC
ACGGGATTAAGATCACATCTTCTTTCCCCCAAGAAGAGCAGGTTGGGCTCAGTGCAGAAG
GCAGGTGGCCTACAGGAGTAGAGAGCTGACTGAGACAGGCTAGACAGCCGGCAGCACCTT
ACCTGTGCCTTGGCCTAGGGAAGGGTCCTGCAACCCTTCCTAAAGTTCTTTCAAGAGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTTGGTTTTAAGATGGAGCTTGGCATGCTCACCCCCCCCCCCCAGAGGAGGGATTTCA
GGGGATTCAAGGGTGTGAAAGTGAAATGGAGCAGGGACTTGGCAGAAAGCAGGCAAGGTG
GTTATGGAACTTTTAAAGCAAGCATTGCCAGCCTCAGCCTTGTAAATACCTTCTGGGTTA
GATCGACAGACAAGAATTAACAGCAGTGCAGCTATCATCAGCTTTGTCTGTTTAGTCTTA
CAGAACCAGGCCAGAGCATCTGGATTAGTTTAAAAAAAAAAAAAACTGATTTATAGCCCC
TTTCAATCATGATGGTAGCAAATATTTGGCCAGTGTTTTCCCAGTACTGCTCTCTGTGTG
ACCTCCATGTCTGCCCCATTTTATAGATGAGGAAACTGAGGTTTAGGAAGATTGAGTGAT
GCAACCAAGGCCACTTGGTTAAAATGAGCCAGAATTATGATTCAAACAAGAATATCTCAT
CCTGAAGCCATAAGATGCCCCTACTCTTATGTCCAAGATAAAATGAAATTCTGGGAAATG
AAATGACGCCAGGGAACTTGTCAGGATCACCTGAATTGCTTGCAGGTGGCAATATTAAGT
ATTTGACAACAATTTGTCCTTGTTGATGGGTTAAACAACTTCACATCTTTGAGCTCATTC
AATAGTCACAGTCCCATGGATGGTGAGGCGCAGAGAGCCTGGCACATAGTAAACACTCAG
GACATGTCAGCTGTTCTTATCACAATTTCCTGGTTGGCCCCAATTTTCTACATTTTTTTC
CCCAGAAACCATTCAGCTATTTCCTAGAGAGGAGTAAGGATTGAAAGCATGGGTTCTGCT
GGGAGTTCCCTGGTGGCTCAGTGGGGTTAAGGACCTGGCATTGACACTGCAGTGGCTCTG
GTTATTGCTGTGGCTAGGGTTCAATCCCTGGCCTGGAAGCTTCTGCATACTGCAGGTGCA
GCCAAAAAAAAAAAAAAAAAAAAAAAAAAAGCAACAGAGTGTCTGTGAAAACCACCCAGC
CTTCCTCTAGCTGTGAGACCTTGGAAGAGTCACTCAGCCTCTCGGTGCCAAACTTGCATC
CCTTGATAAAAGAGGATAGTAATGCCTACATCATAGGTATTGAGTTAACATATGTATAGT
GCTTAGAACAAGGACTGGCATATACTAAGTGCTGTATACGTGTTAGCATTCCGACTTTCT
TAGGATGCCTCTTATACCCGGAAGAAACCCAAAACTCTGTGCCTGACCCTTTGTCATGGT
GTGGGGTCTGGAAAATATGGAACCTATTTGTAGGTAGGGCCAAGATAAATGCCTCCCACA
CCTACCTCCAAGTGGGTAGGTTGATAAGTGGGGTCCTGTTAACTCAGGCTAGGGAATGGC
CCCTTCCTGAGGCTCCAGGGCCAGAAGCCCACAGCTGTCTCCAAGATAGCAGAGGTTCAC
ACGGGATTAAGATCACATCTTCTTTCCCCCAAGAAGAGCAGGTTGGGCTCAGTGCAGAAG
GCAGGTGGCCTACAGGAGTAGAGAGCTGACTGAGACAGGCTAGACAGCCGGCAGCACCTT
ACCTGTGCCTTGGCCTAGGGAAGGGTCCTGCAACCCTTCCTAAAGTTCTTTCAAGAGAGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1040-1170, - strand, RNAz p=0.971908
               

               
               1058-1170, + strand, RNAz p=0.602679

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1040-1170, - strand, RNAz p=0.971908
               

               
               1058-1170, + strand, RNAz p=0.602679

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               2-839, gnl|bosTau2|chr17 (32866915-32867743)
               

               
               2-839, gnl|Hg17|chr10 (80656347-80657195)
               


               
               1004-1170, gnl|bosTau2|chr17 (32867759-32867932)
               

               
               1004-1170, gnl|canFam2|chr4 (32164580-32164941)
               

               
               1004-1170, gnl|echTel1|scaffold_294262 (22326-21966)
               

               
               1004-1170, gnl|hg17|chr10 (80657011-80657322)
               

               
               1004-1170, gnl|Hg17|chr10 (80657211-80657382)
               

               
               1004-1170, gnl|loxAfr1|scaffold_52845 (6848-7187)
               

               
               1004-1170, gnl|oryCun1|scaffold_180410 (20254-20543)
               

               
               1004-1170, gnl|panTro1|chr8 (82048419-82048730)
               

               
               1004-1170, gnl|rheMac2|chr9 (57843876-57843565)
               

               
               1004-1170, gnl|rn3|chr16 (1169806-1170039)
               


               
               1338-1579, gnl|bosTau2|chr17 (32868538-32868788)
               

               
               1338-1579, gnl|Hg17|chr10 (80657553-80657768)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-839, gnl|bosTau2|chr17 (32866915-32867743)
               

               
               2-839, gnl|Hg17|chr10 (80656347-80657195)
               


               
               1004-1170, gnl|bosTau2|chr17 (32867759-32867932)
               

               
               1004-1170, gnl|canFam2|chr4 (32164580-32164941)
               

               
               1004-1170, gnl|echTel1|scaffold_294262 (22326-21966)
               

               
               1004-1170, gnl|hg17|chr10 (80657011-80657322)
               

               
               1004-1170, gnl|Hg17|chr10 (80657211-80657382)
               

               
               1004-1170, gnl|loxAfr1|scaffold_52845 (6848-7187)
               

               
               1004-1170, gnl|oryCun1|scaffold_180410 (20254-20543)
               

               
               1004-1170, gnl|panTro1|chr8 (82048419-82048730)
               

               
               1004-1170, gnl|rheMac2|chr9 (57843876-57843565)
               

               
               1004-1170, gnl|rn3|chr16 (1169806-1170039)
               


               
               1338-1579, gnl|bosTau2|chr17 (32868538-32868788)
               

               
               1338-1579, gnl|Hg17|chr10 (80657553-80657768)

	1040-1170, - strand, RNAz p=0.971908
	1058-1170, + strand, RNAz p=0.602679

	2-839, gnl\|bosTau2\|chr17 (32866915-32867743)
	2-839, gnl\|Hg17\|chr10 (80656347-80657195)

	1004-1170, gnl\|bosTau2\|chr17 (32867759-32867932)
	1004-1170, gnl\|canFam2\|chr4 (32164580-32164941)
	1004-1170, gnl\|echTel1\|scaffold_294262 (22326-21966)
	1004-1170, gnl\|hg17\|chr10 (80657011-80657322)
	1004-1170, gnl\|Hg17\|chr10 (80657211-80657382)
	1004-1170, gnl\|loxAfr1\|scaffold_52845 (6848-7187)
	1004-1170, gnl\|oryCun1\|scaffold_180410 (20254-20543)
	1004-1170, gnl\|panTro1\|chr8 (82048419-82048730)
	1004-1170, gnl\|rheMac2\|chr9 (57843876-57843565)
	1004-1170, gnl\|rn3\|chr16 (1169806-1170039)

	1338-1579, gnl\|bosTau2\|chr17 (32868538-32868788)
	1338-1579, gnl\|Hg17\|chr10 (80657553-80657768)