Non-Coding RNA Search

Ss1.1-Utr1-UTR010076A09.5

Sequence:


               
               AGAGCCTTTGTATCTGCTTAAAGGGGCCGCTGGCACTTCCCCCCTGTCCCCCAACCCCCG
CTTCGCTACCGCGTCTCCTGGGCTCCCAGCAACTGGCTGGAAGGGCTTCCCTCACGCTCA
GGAACAACCCGCCAACGAGAAAAGGCGAGCCAGGCGGGCGGCAAAGAGGAGACACCGCAT
TTCTAAGAGGCGAGAAAGAAAGGAAGGAAGGAAAAAAAATAACCCAAGCGGCGCAGAGTG
GACTCTGGTCCGGGAGAGCACGGTCAGGCGCCGGAACGTGGACGGAGAAGCACCGGAATG
CAAACAAAGCTCGCGGGCGCCTGTGCAGGGCTCGCGGGGAAGCCCAGAAAGTTTGTTTTA
TGATGGCTTGAGTGCGCGAGTGTGTGCGGCGAGCGAGGCTGCCAAGTTTCTCTCTCCCGT
TGCGTTTTTTGGGGGGAGATGTCTCTCCCATGAACCAGCGAGGGCCTGGGGGGGGGGCTT
GTGCTGCGGAGGGACACCTGTCTCTCACTTATTATTTTTTTTGTGGGGGGGAAGAGGGGT
GTAACTCATCATGTCAAAAGTGATCCAGAAGAAGAATCACTGGACTAGCAAGGTTCACGA
ATGCACCGTGAAGCGGGGACCCCAGGGCGAGCTGGGGGTGACCGTGCTGGGGGGCGCGGA
GAATGGAGAGTTTCCTTATGTCGGAGCGGTGGCGGCGGCCGAGGCGTCGGGGCTTCCTGG
CGGCGGCGAGGGGCCCGCGGCTGGGCGAGGGGGAGCTGCTTCTGGAGGTCCAGGGGATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCCTTTGTATCTGCTTAAAGGGGCCGCTGGCACTTCCCCCCTGTCCCCCAACCCCCG
CTTCGCTACCGCGTCTCCTGGGCTCCCAGCAACTGGCTGGAAGGGCTTCCCTCACGCTCA
GGAACAACCCGCCAACGAGAAAAGGCGAGCCAGGCGGGCGGCAAAGAGGAGACACCGCAT
TTCTAAGAGGCGAGAAAGAAAGGAAGGAAGGAAAAAAAATAACCCAAGCGGCGCAGAGTG
GACTCTGGTCCGGGAGAGCACGGTCAGGCGCCGGAACGTGGACGGAGAAGCACCGGAATG
CAAACAAAGCTCGCGGGCGCCTGTGCAGGGCTCGCGGGGAAGCCCAGAAAGTTTGTTTTA
TGATGGCTTGAGTGCGCGAGTGTGTGCGGCGAGCGAGGCTGCCAAGTTTCTCTCTCCCGT
TGCGTTTTTTGGGGGGAGATGTCTCTCCCATGAACCAGCGAGGGCCTGGGGGGGGGGCTT
GTGCTGCGGAGGGACACCTGTCTCTCACTTATTATTTTTTTTGTGGGGGGGAAGAGGGGT
GTAACTCATCATGTCAAAAGTGATCCAGAAGAAGAATCACTGGACTAGCAAGGTTCACGA
ATGCACCGTGAAGCGGGGACCCCAGGGCGAGCTGGGGGTGACCGTGCTGGGGGGCGCGGA
GAATGGAGAGTTTCCTTATGTCGGAGCGGTGGCGGCGGCCGAGGCGTCGGGGCTTCCTGG
CGGCGGCGAGGGGCCCGCGGCTGGGCGAGGGGGAGCTGCTTCTGGAGGTCCAGGGGATCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               391-527, - strand, RNAz p=0.987602
               

               
               557-676, - strand, RNAz p=0.657493

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               391-527, - strand, RNAz p=0.987602
               

               
               557-676, - strand, RNAz p=0.657493

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-780, gnl|bosTau2|chr22 (27029255-27028483)
               

               
               2-780, gnl|Hg17|chr3 (65999559-65998795)
               

               
               2-780, gnl|Mm7|chr6 (94371950-94371195)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-780, gnl|bosTau2|chr22 (27029255-27028483)
               

               
               2-780, gnl|Hg17|chr3 (65999559-65998795)
               

               
               2-780, gnl|Mm7|chr6 (94371950-94371195)

	391-527, - strand, RNAz p=0.987602
	557-676, - strand, RNAz p=0.657493

	2-780, gnl\|bosTau2\|chr22 (27029255-27028483)
	2-780, gnl\|Hg17\|chr3 (65999559-65998795)
	2-780, gnl\|Mm7\|chr6 (94371950-94371195)