Non-Coding RNA Search

Ss1.1-Utr1-UTR010079D10.5

Sequence:


               
               CGCAGCCGGGGTGATGGGAGGAGGGCGTGGGGTGCACGAACTTTCGGAGGGCAGAATCGG
GCCACACTGGGGCTTCTTCAGCTGTGCTGCAGTTGAAGGCTGTGTTTGTCTAAGATGGTC
CCTCAAAAACCGCCCCCCAAAACAAAACCCACGTGGGGAGGAGCAGGCCTTGAGCGGAGG
CGCCCTGGACCGGGAGCGGCGGGGATCACGAGGGCCAGGCTGTGTGGCCAGAGTCACTCC
CAGCCAGCAGAGCCGGGCCGGGCTGCTGCTCTGTGAGAAGCTCCGTTTCCCGGCTGATTC
TGCTCCGAGGTAACCTGAAGATTTTTTTCCTCAGTGAGGTTATTGCCTCAGTTAGACGGC
TCTGATCCTGTTCCCGTGTGGTAACTCCTTTCTTTTTGTGGCTTCATTTTCTCTTCCATG
GTGGAGCCGATGCAGTCCCTGAAACTCGAAGAGCTCTCTTCTTATTCCTCTGAAGCGCAT
TATCCAGCTCCCCTGGATAAGCTCCACTCTGGTTCCGGGATATCAAAGACACCAGGAAGC
CCACGGTGGCGCTCTCTGCTGTAGCGGGTGCCTCACAGGTCAAATGGAATAAAAAAAACG
CTAATTGCCTTGCCACCAGTCACGACGGGGACGTTCGGATATGGGACAAGCGGAAACCCA
GCACGGCAGTGGAATATCTCGCAGCCCACCTCTCCAAAATCCATGGCCTGGACTGGCACC
CAGACAGCGAGCACATTCTCGCCACCTCCAGTCAGGACAACTCGGTCAAGTTCTGGGATT
ACCGCCAGCCTCGGAAATACCTCAGCATTCTCCCTTGCCAGGTGCCTGTCTGGAAGGCCA
GATACACTGTGAGTGAGATGTGCTACCTTTTCCTTGGAAACTTCCCCTGGCTGTACTGGA
CATGAGGGGCCTGGCGTATTTTCTCTTCTTTTCTTTGTGAGGCAGTTTTCTCTTTCTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCAGCCGGGGTGATGGGAGGAGGGCGTGGGGTGCACGAACTTTCGGAGGGCAGAATCGG
GCCACACTGGGGCTTCTTCAGCTGTGCTGCAGTTGAAGGCTGTGTTTGTCTAAGATGGTC
CCTCAAAAACCGCCCCCCAAAACAAAACCCACGTGGGGAGGAGCAGGCCTTGAGCGGAGG
CGCCCTGGACCGGGAGCGGCGGGGATCACGAGGGCCAGGCTGTGTGGCCAGAGTCACTCC
CAGCCAGCAGAGCCGGGCCGGGCTGCTGCTCTGTGAGAAGCTCCGTTTCCCGGCTGATTC
TGCTCCGAGGTAACCTGAAGATTTTTTTCCTCAGTGAGGTTATTGCCTCAGTTAGACGGC
TCTGATCCTGTTCCCGTGTGGTAACTCCTTTCTTTTTGTGGCTTCATTTTCTCTTCCATG
GTGGAGCCGATGCAGTCCCTGAAACTCGAAGAGCTCTCTTCTTATTCCTCTGAAGCGCAT
TATCCAGCTCCCCTGGATAAGCTCCACTCTGGTTCCGGGATATCAAAGACACCAGGAAGC
CCACGGTGGCGCTCTCTGCTGTAGCGGGTGCCTCACAGGTCAAATGGAATAAAAAAAACG
CTAATTGCCTTGCCACCAGTCACGACGGGGACGTTCGGATATGGGACAAGCGGAAACCCA
GCACGGCAGTGGAATATCTCGCAGCCCACCTCTCCAAAATCCATGGCCTGGACTGGCACC
CAGACAGCGAGCACATTCTCGCCACCTCCAGTCAGGACAACTCGGTCAAGTTCTGGGATT
ACCGCCAGCCTCGGAAATACCTCAGCATTCTCCCTTGCCAGGTGCCTGTCTGGAAGGCCA
GATACACTGTGAGTGAGATGTGCTACCTTTTCCTTGGAAACTTCCCCTGGCTGTACTGGA
CATGAGGGGCCTGGCGTATTTTCTCTTCTTTTCTTTGTGAGGCAGTTTTCTCTTTCTGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               389-547, + strand, RNAz p=0.997537

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               389-547, + strand, RNAz p=0.997537

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               416-522, - strand, RNAmicro p=0.938858

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               416-522, - strand, RNAmicro p=0.938858

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               276-653, gnl|bosTau2|chr18 (1194375-1193993)
               

               
               276-653, gnl|Hg17|chr16 (73534507-73534137)
               


               
               766-960, gnl|bosTau2|chr18 (1186756-1186562)
               

               
               766-960, gnl|Hg17|chr16 (73515407-73515211)
               

               
               766-960, gnl|Mm7|chr8 (110092822-110092664)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               276-653, gnl|bosTau2|chr18 (1194375-1193993)
               

               
               276-653, gnl|Hg17|chr16 (73534507-73534137)
               


               
               766-960, gnl|bosTau2|chr18 (1186756-1186562)
               

               
               766-960, gnl|Hg17|chr16 (73515407-73515211)
               

               
               766-960, gnl|Mm7|chr8 (110092822-110092664)

	276-653, gnl\|bosTau2\|chr18 (1194375-1193993)
	276-653, gnl\|Hg17\|chr16 (73534507-73534137)

	766-960, gnl\|bosTau2\|chr18 (1186756-1186562)
	766-960, gnl\|Hg17\|chr16 (73515407-73515211)
	766-960, gnl\|Mm7\|chr8 (110092822-110092664)