Non-Coding RNA Search

Ss1.1-Utr1-UTR010080A11.5

Sequence:


               
               TCAGCCTTCATGGCCATCCCAGTTTTACGGAACAGAAGTTGAAGATGATGTTTATAAACT
GCTTATACTGTTTTTAATCCCCATCTTAAAATAGACATTTTCCCTTAATACAATGCCCAG
GGGCAATCGCCAACTTTGGTTTTTCCAGAAAAATTGTTTTTGACATTGACTTTTGCCCAG
TTTTTTTCAATTTTAAAATGGGATTGCGTTGTTCTAGAATATCGTTAGATGTTCCCACTG
CGCCAGCCACTCGTTTGCACGGCCAACCCACCTACCTTCACTCCCTGCCAGTATTTATCC
TGGGTCACCCCAAGGAGTCCTGTGTCCCTTTAAACCTTTGGAGACTGGTGGGCCTCCTTA
TATCAGATTAATTAGCAAATTTGGGGGGGTGTGATAAGCACCCACCGGGCTTTCTGCTGA
ATATATCGTGTACCAGCAGCGCTCAATTGTTTACTCTTTGTGAAGCTATGAATCATCTTC
CGTCCCCAGGGAGCCCCTAACCAGTAACCATGTTTTTTCCCTGCGACTGAGGTACCCAAG
GATCTCCAGCCCCCATCCTGCGTAAATGCAATATTTAGTTAGGGAAGAGAAAACATAATA
TATGTGACTAGTAAATGTAGCAATTTTTTAAATTAAAACTCTAATGAATTCAAACTCCAA
CTCTTTCCCTTAGGACTGAAAGCCAAGACCTAAAGTTTTATGAATGTCTCCCTCCAACCC
TTTGACTTCACAGGATTGAAAACTAGCCCAACCCTACAAACTGTTGGGCTCGTGATTAGG
GTTAATGTGTGGAAAGATCTGAAAACTGCTTGTTTGATTATTTTTCCCCTCCCTTTGGAA
TTTCCTGCCCTGGAAACAAAGCAGGTTACATGAATTGGTCAGCTTTCATGTGCTGAGTGA
ACATGTAAATACGAAGGGGAATGCCCAGTTGGCCTTGCTGGTGTTAAAAAAAAAAACCAA
AAAAAAAAAATCATTGTTAGTGGGAAAACATGTGTCACACTTGAAATCTGCTTCCAGACA
GCCAGGCTTACAGTTGGAAGGTTATCAGAACTCCATTTGCTTTTTCAGCCTTAATTTTGG
ATTTTTCTCAAATGTTTTGTTTTTTGGTTTTAATTTTTGGTTTGATTTGTTGTTCCAAGG
CAACTCTCCAAAAGTATACTTTCATGGTTTTCCCTCCCTTTTTTCAGTTAGTAAGTAGCT
TACCAATCTATTAACCTGTCTGAGGGTTTCCAAAATCACCCTTCCTTCCACCTTGCCGAG
TGTGTTGTGGCTGCGGATGACGGGAAATGTCTTTCAAATGACAAAATGGCTGTATATAAA
GCTGCCACCTGTTTGCTCACTCCTCCCCCCAGGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGCCTTCATGGCCATCCCAGTTTTACGGAACAGAAGTTGAAGATGATGTTTATAAACT
GCTTATACTGTTTTTAATCCCCATCTTAAAATAGACATTTTCCCTTAATACAATGCCCAG
GGGCAATCGCCAACTTTGGTTTTTCCAGAAAAATTGTTTTTGACATTGACTTTTGCCCAG
TTTTTTTCAATTTTAAAATGGGATTGCGTTGTTCTAGAATATCGTTAGATGTTCCCACTG
CGCCAGCCACTCGTTTGCACGGCCAACCCACCTACCTTCACTCCCTGCCAGTATTTATCC
TGGGTCACCCCAAGGAGTCCTGTGTCCCTTTAAACCTTTGGAGACTGGTGGGCCTCCTTA
TATCAGATTAATTAGCAAATTTGGGGGGGTGTGATAAGCACCCACCGGGCTTTCTGCTGA
ATATATCGTGTACCAGCAGCGCTCAATTGTTTACTCTTTGTGAAGCTATGAATCATCTTC
CGTCCCCAGGGAGCCCCTAACCAGTAACCATGTTTTTTCCCTGCGACTGAGGTACCCAAG
GATCTCCAGCCCCCATCCTGCGTAAATGCAATATTTAGTTAGGGAAGAGAAAACATAATA
TATGTGACTAGTAAATGTAGCAATTTTTTAAATTAAAACTCTAATGAATTCAAACTCCAA
CTCTTTCCCTTAGGACTGAAAGCCAAGACCTAAAGTTTTATGAATGTCTCCCTCCAACCC
TTTGACTTCACAGGATTGAAAACTAGCCCAACCCTACAAACTGTTGGGCTCGTGATTAGG
GTTAATGTGTGGAAAGATCTGAAAACTGCTTGTTTGATTATTTTTCCCCTCCCTTTGGAA
TTTCCTGCCCTGGAAACAAAGCAGGTTACATGAATTGGTCAGCTTTCATGTGCTGAGTGA
ACATGTAAATACGAAGGGGAATGCCCAGTTGGCCTTGCTGGTGTTAAAAAAAAAAACCAA
AAAAAAAAAATCATTGTTAGTGGGAAAACATGTGTCACACTTGAAATCTGCTTCCAGACA
GCCAGGCTTACAGTTGGAAGGTTATCAGAACTCCATTTGCTTTTTCAGCCTTAATTTTGG
ATTTTTCTCAAATGTTTTGTTTTTTGGTTTTAATTTTTGGTTTGATTTGTTGTTCCAAGG
CAACTCTCCAAAAGTATACTTTCATGGTTTTCCCTCCCTTTTTTCAGTTAGTAAGTAGCT
TACCAATCTATTAACCTGTCTGAGGGTTTCCAAAATCACCCTTCCTTCCACCTTGCCGAG
TGTGTTGTGGCTGCGGATGACGGGAAATGTCTTTCAAATGACAAAATGGCTGTATATAAA
GCTGCCACCTGTTTGCTCACTCCTCCCCCCAGGGGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               818-977, - strand, RNAz p=0.914205

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               818-977, - strand, RNAz p=0.914205

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-144, gnl|bosTau2|chr10 (69137082-69137225)
               

               
               1-144, gnl|Hg17|chr14 (90140504-90140369)
               

               
               1-144, gnl|Mm7|chr12 (97837034-97836890)
               


               
               212-1345, gnl|bosTau2|chr10 (69137530-69138654)
               

               
               212-1345, gnl|Hg17|chr14 (90140299-90139203)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-144, gnl|bosTau2|chr10 (69137082-69137225)
               

               
               1-144, gnl|Hg17|chr14 (90140504-90140369)
               

               
               1-144, gnl|Mm7|chr12 (97837034-97836890)
               


               
               212-1345, gnl|bosTau2|chr10 (69137530-69138654)
               

               
               212-1345, gnl|Hg17|chr14 (90140299-90139203)

	1-144, gnl\|bosTau2\|chr10 (69137082-69137225)
	1-144, gnl\|Hg17\|chr14 (90140504-90140369)
	1-144, gnl\|Mm7\|chr12 (97837034-97836890)

	212-1345, gnl\|bosTau2\|chr10 (69137530-69138654)
	212-1345, gnl\|Hg17\|chr14 (90140299-90139203)