Non-Coding RNA Search

Ss1.1-Utr1-UTR01B010106.5

Sequence:


               
               ACGTCTGTGCTTGGCTGGCCGCGGAGTCTGCCGAAGCTCTCCGCAGCGGCTGAGGCGGCT
GAGTGGAAAATGGCCCGGACCGTGGCGGCTGTGGCGGCTTGGGTTGTGGTGGAGGCAGAG
GCTCAGGCAGCGTGAGGTGAGGAGCGGAAGATGCGGCGGGAGCCGGAACCGGGGACCCTA
CTCTGCAAAGGCAGCGAGAAGCCCCTGGGATCCTGGGATGAGAGGGTGTTTTGCCGCGGC
CCCCAGTCTCCCTGGTGCCCGCTTCTGACCCTCCATCCCGGACTCTTAGAGCTGCCCAAG
ACCGACTTACCTCCCTCTTGGGCTTTGCTTCCATCCAGGCGGTTGCCAGGTGCCCGCGCA
TCCACCAGGACCCTCTTGTCGGGGAGTTGGGGGGGTGCGCCCGGGAGTTAGTTTTGTCTC
AAAGGGGGAGGGGAAGCCACCCCCTTGTTCTCTCGGGACCAGGCTTGGAGTCGCGGTGGC
CGGTCCTATTCTCTTGTCGAATTGTTAGATTCTGGCGAGTGTGTGTGTTGCACTTCTCAG
CTGTAATCCCCGCCCCCCGCGTCTTTTCACCTCCTTATTCCTATCTCCGGTTTTAGGGGC
CAACGATCCTGTTTCTTCTCTGTCCCCATTACCCCCGCCCTCTCTCCACTCCCCGGTTGC
CTTTTGCCGCGAATCCGCTTGCTTCGCGAAGAGAGTTTTATTTCAGTGTGTATTTAGCGC
ATCATCATTCTGGGAGGGCGGTCAAATTAAAAATATTTGTTTAACTCTTCCAGAGTGACG
GAGGAACAAATAATTGAAGAAAAAAGCACACACTTATTTTCCTCACTAAATAGTTTGGCT
TTAAAACTGAAATTTTCCAGCTGTGGAATTTTTTCCNGGGGGAGCAGGGATTGAGGAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGTCTGTGCTTGGCTGGCCGCGGAGTCTGCCGAAGCTCTCCGCAGCGGCTGAGGCGGCT
GAGTGGAAAATGGCCCGGACCGTGGCGGCTGTGGCGGCTTGGGTTGTGGTGGAGGCAGAG
GCTCAGGCAGCGTGAGGTGAGGAGCGGAAGATGCGGCGGGAGCCGGAACCGGGGACCCTA
CTCTGCAAAGGCAGCGAGAAGCCCCTGGGATCCTGGGATGAGAGGGTGTTTTGCCGCGGC
CCCCAGTCTCCCTGGTGCCCGCTTCTGACCCTCCATCCCGGACTCTTAGAGCTGCCCAAG
ACCGACTTACCTCCCTCTTGGGCTTTGCTTCCATCCAGGCGGTTGCCAGGTGCCCGCGCA
TCCACCAGGACCCTCTTGTCGGGGAGTTGGGGGGGTGCGCCCGGGAGTTAGTTTTGTCTC
AAAGGGGGAGGGGAAGCCACCCCCTTGTTCTCTCGGGACCAGGCTTGGAGTCGCGGTGGC
CGGTCCTATTCTCTTGTCGAATTGTTAGATTCTGGCGAGTGTGTGTGTTGCACTTCTCAG
CTGTAATCCCCGCCCCCCGCGTCTTTTCACCTCCTTATTCCTATCTCCGGTTTTAGGGGC
CAACGATCCTGTTTCTTCTCTGTCCCCATTACCCCCGCCCTCTCTCCACTCCCCGGTTGC
CTTTTGCCGCGAATCCGCTTGCTTCGCGAAGAGAGTTTTATTTCAGTGTGTATTTAGCGC
ATCATCATTCTGGGAGGGCGGTCAAATTAAAAATATTTGTTTAACTCTTCCAGAGTGACG
GAGGAACAAATAATTGAAGAAAAAAGCACACACTTATTTTCCTCACTAAATAGTTTGGCT
TTAAAACTGAAATTTTCCAGCTGTGGAATTTTTTCCNGGGGGAGCAGGGATTGAGGAGGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               356-460, + strand, RNAz p=0.970711
               

               
               692-808, - strand, RNAz p=0.624208

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               356-460, + strand, RNAz p=0.970711
               

               
               692-808, - strand, RNAz p=0.624208

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-881, gnl|bosTau2|chr15 (23129813-23130703)
               

               
               1-881, gnl|Hg17|chr11 (17186108-17185215)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-881, gnl|bosTau2|chr15 (23129813-23130703)
               

               
               1-881, gnl|Hg17|chr11 (17186108-17185215)

	356-460, + strand, RNAz p=0.970711
	692-808, - strand, RNAz p=0.624208

	1-881, gnl\|bosTau2\|chr15 (23129813-23130703)
	1-881, gnl\|Hg17\|chr11 (17186108-17185215)