Non-Coding RNA Search

Ss1.1-Utr1-UTR01B110084.5

Sequence:


               
               AGACCGGTCTCTGCCTTCCGTCTTGCAGCAGACAGACAGACAGAAGACCCCAGCCAGCCC
CCAGCCAGGCAGCATGCGTGAGTGCATCTCAGTCCACGTGGGCCAGGCCGGTGTGCAGAT
TGGCAATGCCTGCTGGGAGCTCTACTGCTTGGAACATGGGATCCAGCCAGATGGGCAGAT
GCCCAGCGACAAGACCATCGGAGGAGGGGACGACTCCTTCAATACGTTCTTTAGCGAAAC
TGGTGCCGGAAAGCATGTGCCCCGGGCGGTGTTTGTGGATTTGGAGCCCACTGTGATTGA
TGAGGTTCGAACGGGCACGTACCGCCAGCTCTTCCATCCAGAGCAGCTCATCACTGGGAA
GGAAGATGCGGCCAATAACTATGCCCGAGGCCACTACACCATTGGAAAGGAGCTCATTGA
CCTGGTGCTGGACCGAATTCGGAAGCTGGCTGACCAGTGCACAGGACTCCAAGGATTCCT
CATCTTCCACAGCTTTGGAGGCGGCACCGGCTCTGGCTTCACCTCGCTCCTGATGGAGCG
GCTCTCTGTTGACTACGGCAAGAAATCCAAGCTCGAGTTCTCCATCTACCCCGCCCCGCA
GGTGTCCACAGCCGTGGTCGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTGGA
GCACTCAGACTGTGCCTTCATGGTGGACAACGAAGCCATCTATGACATCTGCCGCCGCAA
CCTGGACATCGAGCGTCCCACCTACACCAACCTCAACCGCCTCATCGGCCAAATCGTCTC
CTCCATCACAGCGTCCCTGCGCTTTGATGGGGCCCTCAACGTGGACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACCGGTCTCTGCCTTCCGTCTTGCAGCAGACAGACAGACAGAAGACCCCAGCCAGCCC
CCAGCCAGGCAGCATGCGTGAGTGCATCTCAGTCCACGTGGGCCAGGCCGGTGTGCAGAT
TGGCAATGCCTGCTGGGAGCTCTACTGCTTGGAACATGGGATCCAGCCAGATGGGCAGAT
GCCCAGCGACAAGACCATCGGAGGAGGGGACGACTCCTTCAATACGTTCTTTAGCGAAAC
TGGTGCCGGAAAGCATGTGCCCCGGGCGGTGTTTGTGGATTTGGAGCCCACTGTGATTGA
TGAGGTTCGAACGGGCACGTACCGCCAGCTCTTCCATCCAGAGCAGCTCATCACTGGGAA
GGAAGATGCGGCCAATAACTATGCCCGAGGCCACTACACCATTGGAAAGGAGCTCATTGA
CCTGGTGCTGGACCGAATTCGGAAGCTGGCTGACCAGTGCACAGGACTCCAAGGATTCCT
CATCTTCCACAGCTTTGGAGGCGGCACCGGCTCTGGCTTCACCTCGCTCCTGATGGAGCG
GCTCTCTGTTGACTACGGCAAGAAATCCAAGCTCGAGTTCTCCATCTACCCCGCCCCGCA
GGTGTCCACAGCCGTGGTCGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTGGA
GCACTCAGACTGTGCCTTCATGGTGGACAACGAAGCCATCTATGACATCTGCCGCCGCAA
CCTGGACATCGAGCGTCCCACCTACACCAACCTCAACCGCCTCATCGGCCAAATCGTCTC
CTCCATCACAGCGTCCCTGCGCTTTGATGGGGCCCTCAACGTGGACCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55637949|ref|XP_509043.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55637949|ref|XP_509043.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               69-163, + strand, RNAz p=0.722113
               

               
               653-772, - strand, RNAz p=0.807367

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               69-163, + strand, RNAz p=0.722113
               

               
               653-772, - strand, RNAz p=0.807367

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               69-825, gnl|bosTau2|chr10 (46593792-46593038)
               

               
               69-825, gnl|Hg17|chr12 (47869035-47865664)
               

               
               69-825, gnl|Mm7|chr15 (98938720-98935898)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-825, gnl|bosTau2|chr10 (46593792-46593038)
               

               
               69-825, gnl|Hg17|chr12 (47869035-47865664)
               

               
               69-825, gnl|Mm7|chr15 (98938720-98935898)

	69-163, + strand, RNAz p=0.722113
	653-772, - strand, RNAz p=0.807367

	69-825, gnl\|bosTau2\|chr10 (46593792-46593038)
	69-825, gnl\|Hg17\|chr12 (47869035-47865664)
	69-825, gnl\|Mm7\|chr15 (98938720-98935898)