Non-Coding RNA Search

Ss1.1-Utr1-UTR01B120082.5

Sequence:


               
               TAATAGGGAGAAATGGCGACGGAGCCAAGCCGTGGGCCCCTCTTTGGAACAAGATCTGGG
TACATTAGTCCAGCCTCCAGCCTCAACGAAGTTGGAGCTTGAGAAGGCTGGGAGCCTTCT
GTCCAGCAGCCTCAGAGAGAAAATACTGGGACCTTGGCATCTAGACATCTCCCATCCCCC
CCATGGCCCTGGCAATGCTGAACGAGCTCCTGATTGAGGACCCAAGCCCACCTCTGCTGT
TCTATCAGGTTAGCAAGACTGCCCAGTTTGATACCCTCCACTATCAGAGCTGCTTCATGC
AGAGTGTCTTTGCCCATTTTCCTGAGATCTTATTTGTCCACCGGACCTATAACCCAAGGG
GTAAGGTGCTATATACTTTCCTGGTGGATGGACCTCGGGTGCAGCTGGAGGATCATCTTA
CCCGGGCAGTCTACTTCGCCATTCCTGCCAAGGAGGATGCTGAGGGCTTGGCCCACATGT
TCCAGGTGTTCAAGAAGTTTAACCCAGCGTGGGAGAGAGTCTGTACCATCCTGGTGGATC
CCCATTTCCTCCCAGTGCCCACCCTCGCTATGGAGTTCCCCGCAGCTGAGGTCCTGCTCT
CCGCCTTCCACATCTGTAAGTTCCTCCAGGGCAAGTTCTACCAGCTGTCCCTAGACCAGC
CGGTGGAGAGGGCGCTCCTGAGCTCCCTGCAGAGCACAATGTGCTCGGCCACAGCAGGAA
GGCAATGCCGGATCCGTAACCCACTGAGCAAGGCCAGGAATTGAACCTGCATCCTCACTG
ATGCTAGTCAGATTCGTTTCTGCTGAGCCACAATGGAAAGCCCCTGTTTTGTTGTGTTTT
TTTTTTCTATAACAACCTTCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATAGGGAGAAATGGCGACGGAGCCAAGCCGTGGGCCCCTCTTTGGAACAAGATCTGGG
TACATTAGTCCAGCCTCCAGCCTCAACGAAGTTGGAGCTTGAGAAGGCTGGGAGCCTTCT
GTCCAGCAGCCTCAGAGAGAAAATACTGGGACCTTGGCATCTAGACATCTCCCATCCCCC
CCATGGCCCTGGCAATGCTGAACGAGCTCCTGATTGAGGACCCAAGCCCACCTCTGCTGT
TCTATCAGGTTAGCAAGACTGCCCAGTTTGATACCCTCCACTATCAGAGCTGCTTCATGC
AGAGTGTCTTTGCCCATTTTCCTGAGATCTTATTTGTCCACCGGACCTATAACCCAAGGG
GTAAGGTGCTATATACTTTCCTGGTGGATGGACCTCGGGTGCAGCTGGAGGATCATCTTA
CCCGGGCAGTCTACTTCGCCATTCCTGCCAAGGAGGATGCTGAGGGCTTGGCCCACATGT
TCCAGGTGTTCAAGAAGTTTAACCCAGCGTGGGAGAGAGTCTGTACCATCCTGGTGGATC
CCCATTTCCTCCCAGTGCCCACCCTCGCTATGGAGTTCCCCGCAGCTGAGGTCCTGCTCT
CCGCCTTCCACATCTGTAAGTTCCTCCAGGGCAAGTTCTACCAGCTGTCCCTAGACCAGC
CGGTGGAGAGGGCGCTCCTGAGCTCCCTGCAGAGCACAATGTGCTCGGCCACAGCAGGAA
GGCAATGCCGGATCCGTAACCCACTGAGCAAGGCCAGGAATTGAACCTGCATCCTCACTG
ATGCTAGTCAGATTCGTTTCTGCTGAGCCACAATGGAAAGCCCCTGTTTTGTTGTGTTTT
TTTTTTCTATAACAACCTTCCCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               303-422, + strand, RNAz p=0.775267

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               303-422, + strand, RNAz p=0.775267

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC080525, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC080525, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               30-750, gnl|bosTau2|chr13 (54481138-54481856)
               

               
               30-750, gnl|Hg17|chr20 (43944573-43945293)
               

               
               30-750, gnl|Mm7|chr2 (164565330-164566048)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-750, gnl|bosTau2|chr13 (54481138-54481856)
               

               
               30-750, gnl|Hg17|chr20 (43944573-43945293)
               

               
               30-750, gnl|Mm7|chr2 (164565330-164566048)

	30-750, gnl\|bosTau2\|chr13 (54481138-54481856)
	30-750, gnl\|Hg17\|chr20 (43944573-43945293)
	30-750, gnl\|Mm7\|chr2 (164565330-164566048)