Ss1.1-Utr1-UTR01C100088.5
|
GGCCTTGGGCCTACTGGAAAAAAATAAAAATAAAATAGATGCAGTCAGCAAAGAGAAAAC
AGATCAACTAATCAGTACACAAAGGAAAATATGGACAATGTTGTAAAGGAAATTAGGAGG
------------------------------------GCCGAGGTTGAGGACACAGGTTCG
ATTCCAGCCTCGCTAAGTGGGTTGAGGATCTGGTGTTGCTGTGAGCCACTGTGGTGTAGG
TCGAAGATGTGGCTCGGATCCCTAGTTGCTGTGGCTCTGGCGTAGGCCGGCAGCTACAGC
TCCAATTCGACCCCTAGCCTGGGAACCTCCATATGCCATGGGTGCAGCTCTAAAAAGACA
AAAAAAAAAAAAAAAAAAAAAAAGAGAGAGAGAGAGTGATGAAACATAACTGAGGGTATG
ATGAAGGAAGGGCTCCTATATTAGGCCAGGTGGTCAGAAGAGGCCTCTTGGAGGAGGTGA
CATTTGAGCTGACTCTGAGAGAGAAGGAGCTGGCCAGCTTCGCCCTGGCTCTCTGGGACT
TGGGACCCATGCCTGTCTCAATTTTTGAGTGATTCTCTGTCCCAAGGCTGTAACAACTGC
TAGGCAGTGTTGGGTGCTTACCAAATGCCAGGAAGGTGGGGGTGAGGAAGGTGATGGATC
AGACGGGTCAGGCCTCTGGAGACATGGGCACTGCCATTACCTTGCTATGCGACCTTGTGA
GGTCATACCCCTCCTTGGGTCTCTGCTCCATGGCACAAGGAGAGAGGCCTAAATAGGGTG
GCAAAGCATAGTCACACATTGTCCTCAAGACCAGCCTAATCACAGAGCTGTGGGAATTGG
GTCCCATGCAAGGGATAAGGGCCTATGGGACAGCTTGAATCACTGTCAGCCAATTCTCTC
TCTGTGGACATGCCAGCTCTTACAAATCCAACAGAAACTGGAAACCGGCTTCTCCTCTTA
ATTCTTCTCAGTTATAAATGTTGTCAACAAATGCACATCAAGGGAAAACAGTTATCTTTT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCCTTGGGCCTACTGGAAAAAAATAAAAATAAAATAGATGCAGTCAGCAAAGAGAAAAC
AGATCAACTAATCAGTACACAAAGGAAAATATGGACAATGTTGTAAAGGAAATTAGGAGG
------------------------------------GCCGAGGTTGAGGACACAGGTTCG
ATTCCAGCCTCGCTAAGTGGGTTGAGGATCTGGTGTTGCTGTGAGCCACTGTGGTGTAGG
TCGAAGATGTGGCTCGGATCCCTAGTTGCTGTGGCTCTGGCGTAGGCCGGCAGCTACAGC
TCCAATTCGACCCCTAGCCTGGGAACCTCCATATGCCATGGGTGCAGCTCTAAAAAGACA
AAAAAAAAAAAAAAAAAAAAAAAGAGAGAGAGAGAGTGATGAAACATAACTGAGGGTATG
ATGAAGGAAGGGCTCCTATATTAGGCCAGGTGGTCAGAAGAGGCCTCTTGGAGGAGGTGA
CATTTGAGCTGACTCTGAGAGAGAAGGAGCTGGCCAGCTTCGCCCTGGCTCTCTGGGACT
TGGGACCCATGCCTGTCTCAATTTTTGAGTGATTCTCTGTCCCAAGGCTGTAACAACTGC
TAGGCAGTGTTGGGTGCTTACCAAATGCCAGGAAGGTGGGGGTGAGGAAGGTGATGGATC
AGACGGGTCAGGCCTCTGGAGACATGGGCACTGCCATTACCTTGCTATGCGACCTTGTGA
GGTCATACCCCTCCTTGGGTCTCTGCTCCATGGCACAAGGAGAGAGGCCTAAATAGGGTG
GCAAAGCATAGTCACACATTGTCCTCAAGACCAGCCTAATCACAGAGCTGTGGGAATTGG
GTCCCATGCAAGGGATAAGGGCCTATGGGACAGCTTGAATCACTGTCAGCCAATTCTCTC
TCTGTGGACATGCCAGCTCTTACAAATCCAACAGAAACTGGAAACCGGCTTCTCCTCTTA
ATTCTTCTCAGTTATAAATGTTGTCAACAAATGCACATCAAGGGAAAACAGTTATCTTTT |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
345-557, gnl|bosTau2|chr2 (59686363-59686145) |
|
345-557, gnl|canFam2|chr37 (28043267-28043659) |
|
345-557, gnl|dasNov1|scaffold_44161 (7470-7701) |
|
345-557, gnl|hg17|chr2 (219080447-219080679) |
|
345-557, gnl|Hg17|chr2 (219080551-219080754) |
|
345-557, gnl|loxAfr1|scaffold_43300 (9344-9132) |
|
345-557, gnl|mm7|chr1 (74621796-74621965) |
|
345-557, gnl|oryCun1|scaffold_162522 (4472-4281) |
|
345-557, gnl|panTro1|chr13 (109239934-109240166) |
|
345-557, gnl|rheMac2|chr12 (82224817-82225048) |
|
345-557, gnl|rn3|chr9 (73868761-73868992) |
| |
|
602-974, gnl|bosTau2|chr2 (59686142-59685789) |
|
602-974, gnl|Hg17|chr2 (219080768-219081226) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
345-557, gnl|bosTau2|chr2 (59686363-59686145) |
|
345-557, gnl|canFam2|chr37 (28043267-28043659) |
|
345-557, gnl|dasNov1|scaffold_44161 (7470-7701) |
|
345-557, gnl|hg17|chr2 (219080447-219080679) |
|
345-557, gnl|Hg17|chr2 (219080551-219080754) |
|
345-557, gnl|loxAfr1|scaffold_43300 (9344-9132) |
|
345-557, gnl|mm7|chr1 (74621796-74621965) |
|
345-557, gnl|oryCun1|scaffold_162522 (4472-4281) |
|
345-557, gnl|panTro1|chr13 (109239934-109240166) |
|
345-557, gnl|rheMac2|chr12 (82224817-82225048) |
|
345-557, gnl|rn3|chr9 (73868761-73868992) |
| |
|
602-974, gnl|bosTau2|chr2 (59686142-59685789) |
|
602-974, gnl|Hg17|chr2 (219080768-219081226) |
