Non-Coding RNA Search

Ss1.1-Utr1-UTR01D050093.5

Sequence:


               
               CTACAAACTTACCAGTCTGAGTAATTTGAAGTACAGTAGTTTAAAAAGACTTAGAATTAC
CAAACCGAAAATGTGTGCATATCTAAAGTAGTTTCTTTTCTTGATTTTGGTTAAGTTAAC
AGAAGTATCTTCACATCTGTAATTTCTGGTAACTTAATGAGAACACACTGAACTTTTGGG
TCACAATAAATTTTCCCATTATGTAAAATATTTTACACGCTGGTTGACTCATTGTGACTT
GTGAGTAGACGTGATTCTCTTCCTGCGGAAAATAGAGACGCGTTATTGTAATGACGATGC
TAGCCAGTTACAGAGTCGTGCTTGGCCTGCCATGTGGTCTCCTGCTGGTGGCTTGTTGAA
AACTCCAGGTGGACAAACGGCAGTAGGAGCCGGTTGGGAGCGCCTTGGCTGGGTGTTGGG
AAGCCGTCTTTCTGTAAATCAGTCAGGCGGCTATTTCTCCCATACCTGGGCTTGCTTCTG
CTTTGGTTTTTTTAAGTGATTTTTATTTTTTCTATTGTAGTTGGTTTACAGGGTTCTGCC
AGTTTTCTGCTGTACAGCACAGTGACCCAGTCACACATACATGTATAGATTCTTTTTCTC
ATTGTTTCAGTTTTTACAAGTGTGATGCTTAGCACATTTGTTTTCTCCGACTGCAGTGAC
TCCAAGTCTTATAAATATTTGAGTCTTTTTTTTGTTTTTGTTTTTTATTTTAGGGTCGCA
CCTGCTGCATGTGGAAGTGCCCAGGTGAGGGGTGGAATCAGAGCTACAGTCGCCGGCCTA
CACCACAGCCACAGCAACGTGGGATCCGAGCCACATCTTCAACCTACCCACAGGTCACGG
CAACTCTGGATCCTTAACCCACTG------------------------------------
------------------------------------------------TAGGTCTTAAAA
ATGCAAGTTCTTGGAGTTCCAGATGTGGCACAGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACAAACTTACCAGTCTGAGTAATTTGAAGTACAGTAGTTTAAAAAGACTTAGAATTAC
CAAACCGAAAATGTGTGCATATCTAAAGTAGTTTCTTTTCTTGATTTTGGTTAAGTTAAC
AGAAGTATCTTCACATCTGTAATTTCTGGTAACTTAATGAGAACACACTGAACTTTTGGG
TCACAATAAATTTTCCCATTATGTAAAATATTTTACACGCTGGTTGACTCATTGTGACTT
GTGAGTAGACGTGATTCTCTTCCTGCGGAAAATAGAGACGCGTTATTGTAATGACGATGC
TAGCCAGTTACAGAGTCGTGCTTGGCCTGCCATGTGGTCTCCTGCTGGTGGCTTGTTGAA
AACTCCAGGTGGACAAACGGCAGTAGGAGCCGGTTGGGAGCGCCTTGGCTGGGTGTTGGG
AAGCCGTCTTTCTGTAAATCAGTCAGGCGGCTATTTCTCCCATACCTGGGCTTGCTTCTG
CTTTGGTTTTTTTAAGTGATTTTTATTTTTTCTATTGTAGTTGGTTTACAGGGTTCTGCC
AGTTTTCTGCTGTACAGCACAGTGACCCAGTCACACATACATGTATAGATTCTTTTTCTC
ATTGTTTCAGTTTTTACAAGTGTGATGCTTAGCACATTTGTTTTCTCCGACTGCAGTGAC
TCCAAGTCTTATAAATATTTGAGTCTTTTTTTTGTTTTTGTTTTTTATTTTAGGGTCGCA
CCTGCTGCATGTGGAAGTGCCCAGGTGAGGGGTGGAATCAGAGCTACAGTCGCCGGCCTA
CACCACAGCCACAGCAACGTGGGATCCGAGCCACATCTTCAACCTACCCACAGGTCACGG
CAACTCTGGATCCTTAACCCACTG------------------------------------
------------------------------------------------TAGGTCTTAAAA
ATGCAAGTTCTTGGAGTTCCAGATGTGGCACAGTGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               118-277, - strand, RNAz p=0.963575

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-277, - strand, RNAz p=0.963575

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               166-296, - strand, RNAmicro p=0.996083
               

               
               100-184, + strand, RNAmicro p=0.951654

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               166-296, - strand, RNAmicro p=0.996083
               

               
               100-184, + strand, RNAmicro p=0.951654

Similar Transcript(s): 4 entry(ies)

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Similar Transcript(s): 4 entry(ies)

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               141-277, BP170527 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|BP170527.1|), blast E-value=0, identity=100% 
               

               
               118-277, BP440429 full-length enriched swine cDNA library, adult lung Sus 
(dbj|BP440429.1|), blast E-value=0, identity=99.38% 
               

               
               118-277, BW982408 full-length enriched swine cDNA library, adult intestine 
(dbj|BW982408.1|), blast E-value=0, identity=100% 
               

               
               118-277, CJ038577 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|CJ038577.1|), blast E-value=0, identity=100%

Similar Transcript(s): 4 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               141-277, BP170527 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|BP170527.1|), blast E-value=0, identity=100% 
               

               
               118-277, BP440429 full-length enriched swine cDNA library, adult lung Sus 
(dbj|BP440429.1|), blast E-value=0, identity=99.38% 
               

               
               118-277, BW982408 full-length enriched swine cDNA library, adult intestine 
(dbj|BW982408.1|), blast E-value=0, identity=100% 
               

               
               118-277, CJ038577 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|CJ038577.1|), blast E-value=0, identity=100%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               9-435, gnl|bosTau2|chr21 (46992930-46993365)
               

               
               9-435, gnl|Hg17|chr14 (102358536-102359286)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-435, gnl|bosTau2|chr21 (46992930-46993365)
               

               
               9-435, gnl|Hg17|chr14 (102358536-102359286)

	166-296, - strand, RNAmicro p=0.996083
	100-184, + strand, RNAmicro p=0.951654

	141-277, BP170527 full-length enriched swine cDNA library, adult uterus Sus (dbj\|BP170527.1\|), blast E-value=0, identity=100%
	118-277, BP440429 full-length enriched swine cDNA library, adult lung Sus (dbj\|BP440429.1\|), blast E-value=0, identity=99.38%
	118-277, BW982408 full-length enriched swine cDNA library, adult intestine (dbj\|BW982408.1\|), blast E-value=0, identity=100%
	118-277, CJ038577 full-length enriched swine cDNA library, adult uterus Sus (dbj\|CJ038577.1\|), blast E-value=0, identity=100%

	9-435, gnl\|bosTau2\|chr21 (46992930-46993365)
	9-435, gnl\|Hg17\|chr14 (102358536-102359286)