Ss1.1-Utr1-UTR01E070082.5
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CTTTTCAGGATCCAGGAAGAAGATTCTGTAAGCTTCTCATGTCAGCTCTAGGGAACAATG
GAGGTAAAACCAACCATGTGGAAGGCACGGGGGTCCAGGAAATGCCTAGGGTGGAGCGGG
CCCTGTTTTCTGTCCACCAGACTTTAGTAGAGGACTTGCATCAATGGCTATAGAAACCCG
GCACAAGAAAGGGACAGATGGCATGCTCTGGGCGTTCACTGAGGAAAAGGGCGTGATGAT
ACCTTGGAATATTCCCAACGCTGTTAAGGATGGTTTAGCTTATCGAGGCCGAGTCTTCCT
AGAGATAATCACCCACATGAAATCCCATCAAGACACTATAATGAAGGATCTGTCCCATGA
CGTGATCAGTGTGGAGAAGCAGCAGAACCGCCAAAAGTATGGGCTGTGCGTCATCTTCCT
TTCCTGTACCATGATGCCCAGCTTTAGGGATCTGATCCAATTCGAGGTCAGTATTGGCCA
CTATGGAAACAAGATGGACCTGAGTTACAAGCCCCTCGTCTCAACCACACAGTACAGCCC
GGTGATATACGATGGGAACATCTACCATTACGTGCCCTGGTACAACACCAAGCCCGTCGT
GGCTGTGACCTCCTACTGGGAGGACGTCAGCTTCCGCATGAACTGCCTCAACCTCCTCCA
GTTCACGCGGGACCGCCTGAAAGCCAACCTGGACACTCTGAAATCCATGAGGAATCCGAG
GGACCCAGCTCTACTCCCCCACTGGGAGAAACTGCTGAGGGAGCTGGTAGAGGACTGCAA
GCGCCCTCTGCCCTGCATGACTGACCAACCCAAGGCCACTGACCTGGACAAGAAGAGGTG
GCAGCTCCGAAGCCTCCTTCTGAGGGAATTGGCCCAAAACGCCAAGAAAGCCCAGCCCAG
GGACATGGTGGCCACCGTGGAAAGCTGGCTGTGCCGCCTCAATGCCGTGCTCCCTGAGCC
CCAGGTGAGCCTTCCAGACGTGATGATCTGGCTGATGTCCCGGGAGCAGCGAGTGGCCTA
CGCCCAGGTGCCTGCCCACAGTATCCTGTTCTCTCCGGCCGGGGCCCTGCACTCCGGCAG
GTTCTGTGGGAAGACACAGACCCTCCTCCTGCAGGTGGGGAGGCAGGGGGTCCTCAGGGG
AGGAGAGGGCCCAGGACACCCCAAGGGAAAAGCCCAGAACTCCCTGGCAGCCCCCACAAG
CCTCCCTACAGGCATCTCCACTTCCAGTCTCCCGGGCCCTTTATAGGGTGAAATGGGGTT
TAGCATCCAAATGAAGATGGGGACCTGGTCTTCAGCACAGGGCCAATACCAAGTCCATGC
CCATCATAAACGGCCCTCAAATCTGTCTCTCCATCATCCTTATGCCTCACCTGGTCCAGT
CCCTGTTATCTCTCCTGGGACCACGACTGGCTGCCATCTAAATATTTA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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CTTTTCAGGATCCAGGAAGAAGATTCTGTAAGCTTCTCATGTCAGCTCTAGGGAACAATG
GAGGTAAAACCAACCATGTGGAAGGCACGGGGGTCCAGGAAATGCCTAGGGTGGAGCGGG
CCCTGTTTTCTGTCCACCAGACTTTAGTAGAGGACTTGCATCAATGGCTATAGAAACCCG
GCACAAGAAAGGGACAGATGGCATGCTCTGGGCGTTCACTGAGGAAAAGGGCGTGATGAT
ACCTTGGAATATTCCCAACGCTGTTAAGGATGGTTTAGCTTATCGAGGCCGAGTCTTCCT
AGAGATAATCACCCACATGAAATCCCATCAAGACACTATAATGAAGGATCTGTCCCATGA
CGTGATCAGTGTGGAGAAGCAGCAGAACCGCCAAAAGTATGGGCTGTGCGTCATCTTCCT
TTCCTGTACCATGATGCCCAGCTTTAGGGATCTGATCCAATTCGAGGTCAGTATTGGCCA
CTATGGAAACAAGATGGACCTGAGTTACAAGCCCCTCGTCTCAACCACACAGTACAGCCC
GGTGATATACGATGGGAACATCTACCATTACGTGCCCTGGTACAACACCAAGCCCGTCGT
GGCTGTGACCTCCTACTGGGAGGACGTCAGCTTCCGCATGAACTGCCTCAACCTCCTCCA
GTTCACGCGGGACCGCCTGAAAGCCAACCTGGACACTCTGAAATCCATGAGGAATCCGAG
GGACCCAGCTCTACTCCCCCACTGGGAGAAACTGCTGAGGGAGCTGGTAGAGGACTGCAA
GCGCCCTCTGCCCTGCATGACTGACCAACCCAAGGCCACTGACCTGGACAAGAAGAGGTG
GCAGCTCCGAAGCCTCCTTCTGAGGGAATTGGCCCAAAACGCCAAGAAAGCCCAGCCCAG
GGACATGGTGGCCACCGTGGAAAGCTGGCTGTGCCGCCTCAATGCCGTGCTCCCTGAGCC
CCAGGTGAGCCTTCCAGACGTGATGATCTGGCTGATGTCCCGGGAGCAGCGAGTGGCCTA
CGCCCAGGTGCCTGCCCACAGTATCCTGTTCTCTCCGGCCGGGGCCCTGCACTCCGGCAG
GTTCTGTGGGAAGACACAGACCCTCCTCCTGCAGGTGGGGAGGCAGGGGGTCCTCAGGGG
AGGAGAGGGCCCAGGACACCCCAAGGGAAAAGCCCAGAACTCCCTGGCAGCCCCCACAAG
CCTCCCTACAGGCATCTCCACTTCCAGTCTCCCGGGCCCTTTATAGGGTGAAATGGGGTT
TAGCATCCAAATGAAGATGGGGACCTGGTCTTCAGCACAGGGCCAATACCAAGTCCATGC
CCATCATAAACGGCCCTCAAATCTGTCTCTCCATCATCCTTATGCCTCACCTGGTCCAGT
CCCTGTTATCTCTCCTGGGACCACGACTGGCTGCCATCTAAATATTTA
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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1046-1151, + strand, RNAmicro p=0.999999 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
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1046-1151, + strand, RNAmicro p=0.999999 |
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375-558, gnl|bosTau2|chr11 (3611044-3610861) |
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375-558, gnl|canFam2|chr10 (48406287-48406075) |
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375-558, gnl|danRer3|chr19 (54784426-54784650) |
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375-558, gnl|dasNov1|scaffold_2130 (91348-91536) |
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375-558, gnl|echTel1|scaffold_320008 (180600-180813) |
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375-558, gnl|fr1|chrUn (90547917-90547728) |
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375-558, gnl|hg17|chr2 (96760680-96760896) |
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375-558, gnl|Hg17|chr2 (96760686-96760869) |
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375-558, gnl|loxAfr1|scaffold_5589 (96425-96612) |
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375-558, gnl|mm7|chr1 (36633676-36633891) |
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375-558, gnl|Mm7|chr1 (36633682-36633865) |
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375-558, gnl|monDom2|scaffold_1 (154274172-154274376) |
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375-558, gnl|oryCun1|scaffold_202312 (851-638) |
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375-558, gnl|panTro1|chr12 (99781276-99781492) |
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375-558, gnl|rheMac2|chr9 (92849698-92849511) |
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375-558, gnl|rn3|chr9 (35328343-35328558) |
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375-558, gnl|tetNig1|chr2 (4184939-4185125) |
| |
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949-1428, gnl|bosTau2|chr11 (3600745-3600254) |
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949-1428, gnl|Hg17|chr2 (96773794-96774594) |
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949-1428, gnl|Mm7|chr1 (36644841-36645357) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
375-558, gnl|bosTau2|chr11 (3611044-3610861) |
|
375-558, gnl|canFam2|chr10 (48406287-48406075) |
|
375-558, gnl|danRer3|chr19 (54784426-54784650) |
|
375-558, gnl|dasNov1|scaffold_2130 (91348-91536) |
|
375-558, gnl|echTel1|scaffold_320008 (180600-180813) |
|
375-558, gnl|fr1|chrUn (90547917-90547728) |
|
375-558, gnl|hg17|chr2 (96760680-96760896) |
|
375-558, gnl|Hg17|chr2 (96760686-96760869) |
|
375-558, gnl|loxAfr1|scaffold_5589 (96425-96612) |
|
375-558, gnl|mm7|chr1 (36633676-36633891) |
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375-558, gnl|Mm7|chr1 (36633682-36633865) |
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375-558, gnl|monDom2|scaffold_1 (154274172-154274376) |
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375-558, gnl|oryCun1|scaffold_202312 (851-638) |
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375-558, gnl|panTro1|chr12 (99781276-99781492) |
|
375-558, gnl|rheMac2|chr9 (92849698-92849511) |
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375-558, gnl|rn3|chr9 (35328343-35328558) |
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375-558, gnl|tetNig1|chr2 (4184939-4185125) |
| |
|
949-1428, gnl|bosTau2|chr11 (3600745-3600254) |
|
949-1428, gnl|Hg17|chr2 (96773794-96774594) |
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949-1428, gnl|Mm7|chr1 (36644841-36645357) |
