Non-Coding RNA Search

Ss1.1-Utr1-UTR01H110100.5

Sequence:


               
               AAGAATGGAGAAATAAACAGCCAGCTTCAGAAGTACCCGTGATGTCTCAGAGAGGGCTTT
CTCTCGGGATTTTGGGATCTAGTCTTTTGTTTATTTTATTTTCACCCCTAGGTGTGAGTG
GGTCCAGCAGAAGGAGACATGGCTGCCAAGGTGTTTGAGTCCATCGGCAAGTTTGGCCTG
GCCTTAGCCGTTGCAGGAGGCGTGGTGAACTCTGCCTTGTATAATGGTGAGACACTGAAG
GGTGGTGGGCCACTGCCCTTTGCCAGAAGATGTCTGTTGGTCTGCCTGGCCCATGTGACA
CTCCTGTGGGCAGCCGCTGTCCGTGAATGTGTTTGTGACCAAAGACTGACCTGCCACCAT
CCTAACACCGTATAGTTGCATTGTCATCAGAGCCTCTGTCCCTGTAGCTGTAAGGTTCTC
TCGGAGCCTAGATTCACAGAGAGCCTCCCAGCCCAGTTTGGTGTTTCCGGTTGCTCTTGT
TCTTTACAGTGATGCTGCAGCAGAGTGTCAGGGTTTCTCTGGCCAGCTGAAATGGAGATC
TCGTTTGTTCCCTTCTGCCTGTGTGGGGGATAACTCAAGGGCTTTAGACCTTTGGTGACC
TTGTCCTTGTCCTGAACAGGAGCTTTTGCTCTGCTGTGGTTGGGTCATTCCAGAGAAAAT
AGCGTTGAGATGCATTGCCCAGCTTTCAGCAGTGTGGCAGGGCTTTAAGCTGGTTTTTCA
TCCACTTTCTTGTGTGACCCTAGGCAAGTCACTTTTCCCTCCCCAGGCCTCAGCTTTCTC
ATGGTCGGGCAACAGTGTTGAACTAGTGTATGTGTAAGACCGCGTCCAGCTCTGATGTTC
TTGAACTTTCACTGTTGGAAAGCAGCAGTGGACTGACCCAACTCACGGAGGATTACTTTC
AGGGTAAAGATAATCGAACCAGGGAGTCCCCTTTGTGGCCCAGTGGTTAACGAACCCAAC
TAGAATCCATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAATGGAGAAATAAACAGCCAGCTTCAGAAGTACCCGTGATGTCTCAGAGAGGGCTTT
CTCTCGGGATTTTGGGATCTAGTCTTTTGTTTATTTTATTTTCACCCCTAGGTGTGAGTG
GGTCCAGCAGAAGGAGACATGGCTGCCAAGGTGTTTGAGTCCATCGGCAAGTTTGGCCTG
GCCTTAGCCGTTGCAGGAGGCGTGGTGAACTCTGCCTTGTATAATGGTGAGACACTGAAG
GGTGGTGGGCCACTGCCCTTTGCCAGAAGATGTCTGTTGGTCTGCCTGGCCCATGTGACA
CTCCTGTGGGCAGCCGCTGTCCGTGAATGTGTTTGTGACCAAAGACTGACCTGCCACCAT
CCTAACACCGTATAGTTGCATTGTCATCAGAGCCTCTGTCCCTGTAGCTGTAAGGTTCTC
TCGGAGCCTAGATTCACAGAGAGCCTCCCAGCCCAGTTTGGTGTTTCCGGTTGCTCTTGT
TCTTTACAGTGATGCTGCAGCAGAGTGTCAGGGTTTCTCTGGCCAGCTGAAATGGAGATC
TCGTTTGTTCCCTTCTGCCTGTGTGGGGGATAACTCAAGGGCTTTAGACCTTTGGTGACC
TTGTCCTTGTCCTGAACAGGAGCTTTTGCTCTGCTGTGGTTGGGTCATTCCAGAGAAAAT
AGCGTTGAGATGCATTGCCCAGCTTTCAGCAGTGTGGCAGGGCTTTAAGCTGGTTTTTCA
TCCACTTTCTTGTGTGACCCTAGGCAAGTCACTTTTCCCTCCCCAGGCCTCAGCTTTCTC
ATGGTCGGGCAACAGTGTTGAACTAGTGTATGTGTAAGACCGCGTCCAGCTCTGATGTTC
TTGAACTTTCACTGTTGGAAAGCAGCAGTGGACTGACCCAACTCACGGAGGATTACTTTC
AGGGTAAAGATAATCGAACCAGGGAGTCCCCTTTGTGGCCCAGTGGTTAACGAACCCAAC
TAGAATCCATGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               82-273, + strand, RNAz p=0.787661

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-273, + strand, RNAz p=0.787661

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-718, gnl|bosTau2|chr19 (29984176-29984885)
               

               
               3-718, gnl|Hg17|chr17 (44845761-44845046)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-718, gnl|bosTau2|chr19 (29984176-29984885)
               

               
               3-718, gnl|Hg17|chr17 (44845761-44845046)

	3-718, gnl\|bosTau2\|chr19 (29984176-29984885)
	3-718, gnl\|Hg17\|chr17 (44845761-44845046)