Non-Coding RNA Search

Ss1.1-Utr2-C0001788_H03.5

Sequence:


               
               GGGGAAGAAGGGCTATGTTCCCTCCAATTATATCTGCAAAACTGAGTACACCTGAACCTG
TCCTGCTTCCCGCTCCACCTTGCTGCCTTCCCTTCCTTCTGCTGAAGGGTTCTGGTGTCC
ATCGAGAGGGCACCTGCTCCTGAGACACTGGCCCTGCCCGCGTTGCTTGACCATGCCACG
GGGAGCCACAAGATGAGTCTTGTTCTCCTCAACTGGGTTGTCAACCTTGATGCTCTCTAG
GATTTCTAGAATTTGAAAGGGACCCTGGGGCTTGCAAGTGATTTCAGTGACCGTGAGAAG
AGAGGCAAGTCCTGGGTCAGCCTATGGAAAGAGAAATTTCCAGTCAGTAGACCAGCATCC
CGTGTATGCTGGAAGCTGTGCTGTAGCATTAGAAGAATTTGGCGTTGGTTGTGCCATGCT
GAGTTTGGGGTGGCCCCATGCTCCCTGATCAACTGACCGGAACTGACTCAGATGAAGAGA
ATTCTCTGGGAGCCCTTTTAGGCCACGCTTCTGCATGTGGCAAAGGAGTTTGTCCAGATG
TACCGAATCTGGTCTTTCAAACCTCATGTCTGGTACACATTCGCACACACCCGTTATTTC
TAAGTTCCTAAAACACTACCGTCTGTAATCTTTTTTTATTTATTTCACTGCATTTCCGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGAAGAAGGGCTATGTTCCCTCCAATTATATCTGCAAAACTGAGTACACCTGAACCTG
TCCTGCTTCCCGCTCCACCTTGCTGCCTTCCCTTCCTTCTGCTGAAGGGTTCTGGTGTCC
ATCGAGAGGGCACCTGCTCCTGAGACACTGGCCCTGCCCGCGTTGCTTGACCATGCCACG
GGGAGCCACAAGATGAGTCTTGTTCTCCTCAACTGGGTTGTCAACCTTGATGCTCTCTAG
GATTTCTAGAATTTGAAAGGGACCCTGGGGCTTGCAAGTGATTTCAGTGACCGTGAGAAG
AGAGGCAAGTCCTGGGTCAGCCTATGGAAAGAGAAATTTCCAGTCAGTAGACCAGCATCC
CGTGTATGCTGGAAGCTGTGCTGTAGCATTAGAAGAATTTGGCGTTGGTTGTGCCATGCT
GAGTTTGGGGTGGCCCCATGCTCCCTGATCAACTGACCGGAACTGACTCAGATGAAGAGA
ATTCTCTGGGAGCCCTTTTAGGCCACGCTTCTGCATGTGGCAAAGGAGTTTGTCCAGATG
TACCGAATCTGGTCTTTCAAACCTCATGTCTGGTACACATTCGCACACACCCGTTATTTC
TAAGTTCCTAAAACACTACCGTCTGTAATCTTTTTTTATTTATTTCACTGCATTTCCGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               549-646, - strand, RNAz p=0.591556

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               549-646, - strand, RNAz p=0.591556

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-660, gnl|bosTau2|chr26 (12151930-12152585)
               

               
               2-660, gnl|Hg17|chr10 (101626951-101626271)
               

               
               2-660, gnl|Mm7|chr19 (43742019-43741453)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-660, gnl|bosTau2|chr26 (12151930-12152585)
               

               
               2-660, gnl|Hg17|chr10 (101626951-101626271)
               

               
               2-660, gnl|Mm7|chr19 (43742019-43741453)

	2-660, gnl\|bosTau2\|chr26 (12151930-12152585)
	2-660, gnl\|Hg17\|chr10 (101626951-101626271)
	2-660, gnl\|Mm7\|chr19 (43742019-43741453)