Non-Coding RNA Search

Ss1.1-Utr2-C0001788_N10.5

Sequence:


               
               AAACATGCCTTCCAGACAGACAACAGTAAGATATGCCAGTACCTGCTGCACCTCTGCTCT
TCCCAGCACAAGTTCCAGCTGCAGATGAGGGCAAGGCAGAGCAACCAAGATGCCCAAGAT
ATTGAGAGAGCTTCGTTTAGGAGCCTGAATCTCCAAGCAGAGTCCGTTAGAGGATTTAAT
ATGGGACGAGCAATCAGCACTGGTAGTCTGGCCAGCAGCACCCTGAACAAACTTGCCGTT
CGACCTCTGTCAGTGCAAGCTGAGATTCTGAAGAGGCTCTCCTGCTCAGAGCTGTCGCTT
TACCAGCCATTGCAAAACAGTGCAAAAGAGAAGAGTGACAAAGCTTCCTGGGAGGAAAAG
CCTAGAGGGATGAGTAAATCATACCACGATCTCAGTCAGGCCTCTCTCTATCCGCATCGG
AAAAATGTCAGTGTTAACTCGGAATCCCCACCACACACCCTTGCGGAGTTGGTAGGAAAA
CCATTTCACCAGATGGCGAGATCTGATACAGAATCTTTGGCAGGATTCGCAAAACTTAAT
AATTCAAAGTCTGTTGCAAGTGTAAATAGAAGTCCTGAGAGGAGGAAGCCTGAATCCGAA
TCCTCATCCTTTGAAGACCCTGGTCACGCATGTGCTCTAGGAGTGACTTTGCATAGTTCT
GGAAATTCTTCATCCCAAGTACCCTTAAAAGAAAATGATGTGCTGCACAAAAGATGGAGC
ATAGTGTCTTCACCAGAAAGAGAGATCACCCTGGTTAAACCTGAAAAAGAATGCAAGTAT
GGCTTTAGATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACATGCCTTCCAGACAGACAACAGTAAGATATGCCAGTACCTGCTGCACCTCTGCTCT
TCCCAGCACAAGTTCCAGCTGCAGATGAGGGCAAGGCAGAGCAACCAAGATGCCCAAGAT
ATTGAGAGAGCTTCGTTTAGGAGCCTGAATCTCCAAGCAGAGTCCGTTAGAGGATTTAAT
ATGGGACGAGCAATCAGCACTGGTAGTCTGGCCAGCAGCACCCTGAACAAACTTGCCGTT
CGACCTCTGTCAGTGCAAGCTGAGATTCTGAAGAGGCTCTCCTGCTCAGAGCTGTCGCTT
TACCAGCCATTGCAAAACAGTGCAAAAGAGAAGAGTGACAAAGCTTCCTGGGAGGAAAAG
CCTAGAGGGATGAGTAAATCATACCACGATCTCAGTCAGGCCTCTCTCTATCCGCATCGG
AAAAATGTCAGTGTTAACTCGGAATCCCCACCACACACCCTTGCGGAGTTGGTAGGAAAA
CCATTTCACCAGATGGCGAGATCTGATACAGAATCTTTGGCAGGATTCGCAAAACTTAAT
AATTCAAAGTCTGTTGCAAGTGTAAATAGAAGTCCTGAGAGGAGGAAGCCTGAATCCGAA
TCCTCATCCTTTGAAGACCCTGGTCACGCATGTGCTCTAGGAGTGACTTTGCATAGTTCT
GGAAATTCTTCATCCCAAGTACCCTTAAAAGAAAATGATGTGCTGCACAAAAGATGGAGC
ATAGTGTCTTCACCAGAAAGAGAGATCACCCTGGTTAAACCTGAAAAAGAATGCAAGTAT
GGCTTTAGATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55623676|ref|XP_517574.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55623676|ref|XP_517574.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               363-542, - strand, RNAz p=0.626416

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               363-542, - strand, RNAz p=0.626416

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               124-542, gnl|bosTau2|chr6 (59513242-59512824)
               

               
               124-542, gnl|Hg17|chr4 (88028801-88029219)
               

               
               124-542, gnl|Mm7|chr5 (102730276-102730691)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               124-542, gnl|bosTau2|chr6 (59513242-59512824)
               

               
               124-542, gnl|Hg17|chr4 (88028801-88029219)
               

               
               124-542, gnl|Mm7|chr5 (102730276-102730691)

	124-542, gnl\|bosTau2\|chr6 (59513242-59512824)
	124-542, gnl\|Hg17\|chr4 (88028801-88029219)
	124-542, gnl\|Mm7\|chr5 (102730276-102730691)