Non-Coding RNA Search

Ss1.1-Utr2-C0001798_K12.5

Sequence:


               
               TCAATACTAGCCGTCTGCACCGAGTACTGAGAAATCTCTGCTACCATGCCCAGACCCGCC
ACTGGGTCATCCGCAGCCTCCTCTCCATCTTGCAACGCAGCAGTGAGAGTGAGCTATGCA
TTGAAACACCCAAGCTGTCCTCAAGTGAGGAAAAGGGCAAAAAGTCAAGCAAGAGCTGTG
GGTCAAGCAGCCATGAGAACCGGCCCCTGGACCTACTACACAAAATGGAATCTAAGAGCT
CCAACCAGCTTTCCTGGCTCTCAGTATCCATGGATGCAGCCCTAGGCTGCAGGACTAATA
TATTCCAGATTCAGCGTTCAGGAGGGCGCAAACATACTGAGAAGCATGCAAGCAGTGGCT
CCACTGTCCACATCCATCCTCAGGCTGCTCCTGTTGTCTGCAGACATGTTCTGGACACAC
TCATTCAACTGGCCAAGGTGAGGAACCCAACTCCTAGAGATAGAAGAGGGGTATCAGTTA
CTAGGTGAAATCTGAACTCTGGGGGAGCTAACAAGTCTTCACTGTTGGTACTGAGGCCTG
TATTGCTTCTGGGAAATTGTGTAGTAAATAACTTTGTGGGGGTCTTTATCTTCACTCTTT
ATGATTTTTATGCATAATCTCATTCAGTCCTCAGAACAACCCTCGGCAGTCTGTATGGTT
CCCATTTTACAGATGAAGAAGCTGGGATTCAAAAATTTTTAGTTTTGTCATGTGACTAAT
AAGTGATGAAGCTGGTTGGAACTTANTTTAATCTTTTTTCTAATAATTTTGCTCCCATTT
GTTGAGGGATTACCTTGTACCANGCACTATGCAAATTATCTCTAATCTCAACAGTTTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAATACTAGCCGTCTGCACCGAGTACTGAGAAATCTCTGCTACCATGCCCAGACCCGCC
ACTGGGTCATCCGCAGCCTCCTCTCCATCTTGCAACGCAGCAGTGAGAGTGAGCTATGCA
TTGAAACACCCAAGCTGTCCTCAAGTGAGGAAAAGGGCAAAAAGTCAAGCAAGAGCTGTG
GGTCAAGCAGCCATGAGAACCGGCCCCTGGACCTACTACACAAAATGGAATCTAAGAGCT
CCAACCAGCTTTCCTGGCTCTCAGTATCCATGGATGCAGCCCTAGGCTGCAGGACTAATA
TATTCCAGATTCAGCGTTCAGGAGGGCGCAAACATACTGAGAAGCATGCAAGCAGTGGCT
CCACTGTCCACATCCATCCTCAGGCTGCTCCTGTTGTCTGCAGACATGTTCTGGACACAC
TCATTCAACTGGCCAAGGTGAGGAACCCAACTCCTAGAGATAGAAGAGGGGTATCAGTTA
CTAGGTGAAATCTGAACTCTGGGGGAGCTAACAAGTCTTCACTGTTGGTACTGAGGCCTG
TATTGCTTCTGGGAAATTGTGTAGTAAATAACTTTGTGGGGGTCTTTATCTTCACTCTTT
ATGATTTTTATGCATAATCTCATTCAGTCCTCAGAACAACCCTCGGCAGTCTGTATGGTT
CCCATTTTACAGATGAAGAAGCTGGGATTCAAAAATTTTTAGTTTTGTCATGTGACTAAT
AAGTGATGAAGCTGGTTGGAACTTANTTTAATCTTTTTTCTAATAATTTTGCTCCCATTT
GTTGAGGGATTACCTTGTACCANGCACTATGCAAATTATCTCTAATCTCAACAGTTTTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61844301|ref|XP_608554.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61844301|ref|XP_608554.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-159, - strand, RNAz p=0.510865
               

               
               200-359, - strand, RNAz p=0.82593

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.510865
               

               
               200-359, - strand, RNAz p=0.82593

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-840, gnl|bosTau2|chrX (26918752-26917909)
               

               
               1-840, gnl|Hg17|chrX (53459377-53458521)
               

               
               1-840, gnl|Mm7|chrX (146677166-146677999)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-840, gnl|bosTau2|chrX (26918752-26917909)
               

               
               1-840, gnl|Hg17|chrX (53459377-53458521)
               

               
               1-840, gnl|Mm7|chrX (146677166-146677999)

	40-159, - strand, RNAz p=0.510865
	200-359, - strand, RNAz p=0.82593

	1-840, gnl\|bosTau2\|chrX (26918752-26917909)
	1-840, gnl\|Hg17\|chrX (53459377-53458521)
	1-840, gnl\|Mm7\|chrX (146677166-146677999)