Non-Coding RNA Search

Ss1.1-Utr2-C0001799_E05.5

Sequence:


               
               GTTTTTTTTTTTTTTGAGAAAGTGGCATGGAAACATGCAATAGTTAATGAGTTTCTCTTG
GTACTGAACACTATTAGAATATCATTAGTGATATTTTTTCTCTTTAGAGCATTTTTAATG
CAACTATCCCCTATATTTTAACGTAAGAGTTACTCTGCAATCTAAGCAAAGCACCCACAA
TGGTAGATGTTTTTTAAAAATGCTGAACTAAGATTCTTGACTCTAAAGAGAGAAAATTAC
AAGGGTGTTGCCTTACTGCAGCCCCTTGGGACAATCCTTCACGTAAGCAAAGTGTTGATC
TTAATATTGGTTGTCTATGGTGTGCTTTTTTGTACTGTAAAAATATGTGGTTCATGTCTA
ACTCTGCTGTTTTATTGTGGTTGTGGTTCAAGTTTTTAATGTTTAAAGTTGATGCTGTTT
TCAGAAGAGCTTTTTACTAATTTATTTGTCGATGTTCCCTATTTGTTACTTAACCATGAT
CCTCCAGATTTTTGGAGTATTCTTTTCTAACCTTAACCCTGCCAACCTTGATCCATTTGA
CATTTGTTATGCACTATTTTTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTTTTTTTTTTGAGAAAGTGGCATGGAAACATGCAATAGTTAATGAGTTTCTCTTG
GTACTGAACACTATTAGAATATCATTAGTGATATTTTTTCTCTTTAGAGCATTTTTAATG
CAACTATCCCCTATATTTTAACGTAAGAGTTACTCTGCAATCTAAGCAAAGCACCCACAA
TGGTAGATGTTTTTTAAAAATGCTGAACTAAGATTCTTGACTCTAAAGAGAGAAAATTAC
AAGGGTGTTGCCTTACTGCAGCCCCTTGGGACAATCCTTCACGTAAGCAAAGTGTTGATC
TTAATATTGGTTGTCTATGGTGTGCTTTTTTGTACTGTAAAAATATGTGGTTCATGTCTA
ACTCTGCTGTTTTATTGTGGTTGTGGTTCAAGTTTTTAATGTTTAAAGTTGATGCTGTTT
TCAGAAGAGCTTTTTACTAATTTATTTGTCGATGTTCCCTATTTGTTACTTAACCATGAT
CCTCCAGATTTTTGGAGTATTCTTTTCTAACCTTAACCCTGCCAACCTTGATCCATTTGA
CATTTGTTATGCACTATTTTTATA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               9-115, - strand, RNAz p=0.964196
               

               
               191-314, + strand, RNAz p=0.894771

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               9-115, - strand, RNAz p=0.964196
               

               
               191-314, + strand, RNAz p=0.894771

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               16-115, DA148990 BRAMY2 Homo sapiens cDNA clone BRAMY2006397 5', mRNA 
(dbj|DA148990.1|), blast E-value=0, identity=99% 
               

               
               16-115, DA294791 BRHIP2 Homo sapiens cDNA clone BRHIP2007352 5', mRNA 
(dbj|DA294791.1|), blast E-value=0, identity=99% 
               

               
               16-115, DA342408 BRSSN2 Homo sapiens cDNA clone BRSSN2002102 5', mRNA 
(dbj|DA342408.1|), blast E-value=0, identity=99% 
               

               
               16-115, DB008317 TCERX2 Homo sapiens cDNA clone TCERX2002042 5', mRNA 
(dbj|DB008317.1|), blast E-value=0, identity=99% 
               

               
               16-115, DKFZp468A0528_r1 468 (synonym (emb|CR629038.1|), blast E-value=0, 
identity=99% 
               

               
               16-115, UMC-pd6end1-007-f11 Endometrium gilt D6 of estrous cycle pd6end Sus 
(gb|CO992151.1|), blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               16-115, DA148990 BRAMY2 Homo sapiens cDNA clone BRAMY2006397 5', mRNA 
(dbj|DA148990.1|), blast E-value=0, identity=99% 
               

               
               16-115, DA294791 BRHIP2 Homo sapiens cDNA clone BRHIP2007352 5', mRNA 
(dbj|DA294791.1|), blast E-value=0, identity=99% 
               

               
               16-115, DA342408 BRSSN2 Homo sapiens cDNA clone BRSSN2002102 5', mRNA 
(dbj|DA342408.1|), blast E-value=0, identity=99% 
               

               
               16-115, DB008317 TCERX2 Homo sapiens cDNA clone TCERX2002042 5', mRNA 
(dbj|DB008317.1|), blast E-value=0, identity=99% 
               

               
               16-115, DKFZp468A0528_r1 468 (synonym (emb|CR629038.1|), blast E-value=0, 
identity=99% 
               

               
               16-115, UMC-pd6end1-007-f11 Endometrium gilt D6 of estrous cycle pd6end Sus 
(gb|CO992151.1|), blast E-value=0, identity=100%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_182646, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_182646, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-564, gnl|bosTau2|chr6 (63492040-63491482)
               

               
               9-564, gnl|Hg17|chr4 (14745791-14746360)
               

               
               9-564, gnl|Mm7|chr5 (42607052-42607631)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-564, gnl|bosTau2|chr6 (63492040-63491482)
               

               
               9-564, gnl|Hg17|chr4 (14745791-14746360)
               

               
               9-564, gnl|Mm7|chr5 (42607052-42607631)

	9-115, - strand, RNAz p=0.964196
	191-314, + strand, RNAz p=0.894771

	16-115, DA148990 BRAMY2 Homo sapiens cDNA clone BRAMY2006397 5', mRNA (dbj\|DA148990.1\|), blast E-value=0, identity=99%
	16-115, DA294791 BRHIP2 Homo sapiens cDNA clone BRHIP2007352 5', mRNA (dbj\|DA294791.1\|), blast E-value=0, identity=99%
	16-115, DA342408 BRSSN2 Homo sapiens cDNA clone BRSSN2002102 5', mRNA (dbj\|DA342408.1\|), blast E-value=0, identity=99%
	16-115, DB008317 TCERX2 Homo sapiens cDNA clone TCERX2002042 5', mRNA (dbj\|DB008317.1\|), blast E-value=0, identity=99%
	16-115, DKFZp468A0528_r1 468 (synonym (emb\|CR629038.1\|), blast E-value=0, identity=99%
	16-115, UMC-pd6end1-007-f11 Endometrium gilt D6 of estrous cycle pd6end Sus (gb\|CO992151.1\|), blast E-value=0, identity=100%

	9-564, gnl\|bosTau2\|chr6 (63492040-63491482)
	9-564, gnl\|Hg17\|chr4 (14745791-14746360)
	9-564, gnl\|Mm7\|chr5 (42607052-42607631)