Ss1.1-Utr2-C0001804_E23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGCCAGGGATTTCCCTTGGCTCTTAGTGGCCGGGATATGGTGGGCATTGCTCAGACTG GCTCTGGGAAGACATTGGCGTATTTGGTGCCGGCAATTGTTCATATTAACCACCAGCCTT ACTTGGAAAGGGGAGACGGCCCAATTTGTCTAGTTCTGGCTCCTACCAGAGAGCTTGCCC AGCAAGTGCAGCAGGTGGCCGATGACTATGGCAAATGTTCTAGATTGAAGAGTACTTGCA TTTATGGAGGTGCTCCTAAAGGTCCCCAGATTCGAGATTTGGAGAGAGGTGTTGAAATCT GTATAGCTACTCCTGGACGCCTGATAGATTTCCTGGAGTCAGGAAAGACAAATCTTCGCC GGTGTACTTACCTTGTACTGGATGAGGCTGACAGAATGCTTGACATGGGCTTTGAACCCC AGATTCGTAAAATTGTTGACCAAATTAGGCCTGATAGGCAGACATTGATGTGGAGTGCAA CCTGGCCGAAAGAAGTAAGACAGCTTGCAGAGGATTTCCTTCGTGATTACACTCAGATCA ATGTAGGCAATCTGGAGTTGAGTGCCAACCACAACATCCTCCAGATTGTGGATGTCTGCA TGGAGAGTGAAAAAGACCACAAGTTGATCCAGCTCATGGAGGAAATAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGCCAGGGATTTCCCTTGGCTCTTAGTGGCCGGGATATGGTGGGCATTGCTCAGACTG GCTCTGGGAAGACATTGGCGTATTTGGTGCCGGCAATTGTTCATATTAACCACCAGCCTT ACTTGGAAAGGGGAGACGGCCCAATTTGTCTAGTTCTGGCTCCTACCAGAGAGCTTGCCC AGCAAGTGCAGCAGGTGGCCGATGACTATGGCAAATGTTCTAGATTGAAGAGTACTTGCA TTTATGGAGGTGCTCCTAAAGGTCCCCAGATTCGAGATTTGGAGAGAGGTGTTGAAATCT GTATAGCTACTCCTGGACGCCTGATAGATTTCCTGGAGTCAGGAAAGACAAATCTTCGCC GGTGTACTTACCTTGTACTGGATGAGGCTGACAGAATGCTTGACATGGGCTTTGAACCCC AGATTCGTAAAATTGTTGACCAAATTAGGCCTGATAGGCAGACATTGATGTGGAGTGCAA CCTGGCCGAAAGAAGTAAGACAGCTTGCAGAGGATTTCCTTCGTGATTACACTCAGATCA ATGTAGGCAATCTGGAGTTGAGTGCCAACCACAACATCCTCCAGATTGTGGATGTCTGCA TGGAGAGTGAAAAAGACCACAAGTTGATCCAGCTCATGGAGGAAATAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 327-446, + strand, RNAz p=0.93897 | |
| 449-567, + strand, RNAz p=0.942281 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 327-446, + strand, RNAz p=0.93897 | |
| 449-567, + strand, RNAz p=0.942281 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 287-448, gnl|bosTau2|chr19 (42626679-42626518) | |
| 287-448, gnl|Hg17|chr17 (59929930-59929769) | |
| 287-448, gnl|Mm7|chr11 (106894339-106894178) | |
| 449-624, gnl|bosTau2|chr5 (68013834-68014009) | |
| 449-624, gnl|canFam2|chr10 (29364922-29364712) | |
| 449-624, gnl|danRer3|chrUn (20968652-20968454) | |
| 449-624, gnl|dasNov1|scaffold_50486 (7990-8200) | |
| 449-624, gnl|echTel1|scaffold_309177 (86319-86099) | |
| 449-624, gnl|fr1|chrUn (249128325-249128531) | |
| 449-624, gnl|galGal2|chr1 (47611900-47611691) | |
| 449-624, gnl|hg17|chr22 (37215128-37215338) | |
| 449-624, gnl|Hg17|chr22 (37215308-37215133) | |
| 449-624, gnl|loxAfr1|scaffold_39570 (12040-12252) | |
| 449-624, gnl|mm7|chr15 (79622683-79622893) | |
| 449-624, gnl|Mm7|chr15 (79622864-79622689) | |
| 449-624, gnl|monDom2|scaffold_133 (2585584-2585367) | |
| 449-624, gnl|oryCun1|scaffold_104905 (63-270) | |
| 449-624, gnl|panTro1|chr23 (37439105-37439315) | |
| 449-624, gnl|rheMac2|chr10 (82398176-82398386) | |
| 449-624, gnl|rn3|chr7 (117579318-117579108) | |
| 449-624, gnl|tetNig1|chrUn_random (127448604-127448382) | |
| 449-624, gnl|xenTro1|scaffold_325 (235185-234967) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 287-448, gnl|bosTau2|chr19 (42626679-42626518) | |
| 287-448, gnl|Hg17|chr17 (59929930-59929769) | |
| 287-448, gnl|Mm7|chr11 (106894339-106894178) | |
| 449-624, gnl|bosTau2|chr5 (68013834-68014009) | |
| 449-624, gnl|canFam2|chr10 (29364922-29364712) | |
| 449-624, gnl|danRer3|chrUn (20968652-20968454) | |
| 449-624, gnl|dasNov1|scaffold_50486 (7990-8200) | |
| 449-624, gnl|echTel1|scaffold_309177 (86319-86099) | |
| 449-624, gnl|fr1|chrUn (249128325-249128531) | |
| 449-624, gnl|galGal2|chr1 (47611900-47611691) | |
| 449-624, gnl|hg17|chr22 (37215128-37215338) | |
| 449-624, gnl|Hg17|chr22 (37215308-37215133) | |
| 449-624, gnl|loxAfr1|scaffold_39570 (12040-12252) | |
| 449-624, gnl|mm7|chr15 (79622683-79622893) | |
| 449-624, gnl|Mm7|chr15 (79622864-79622689) | |
| 449-624, gnl|monDom2|scaffold_133 (2585584-2585367) | |
| 449-624, gnl|oryCun1|scaffold_104905 (63-270) | |
| 449-624, gnl|panTro1|chr23 (37439105-37439315) | |
| 449-624, gnl|rheMac2|chr10 (82398176-82398386) | |
| 449-624, gnl|rn3|chr7 (117579318-117579108) | |
| 449-624, gnl|tetNig1|chrUn_random (127448604-127448382) | |
| 449-624, gnl|xenTro1|scaffold_325 (235185-234967) |