Non-Coding RNA Search

Ss1.1-Utr2-C0001811_F24.5

Sequence:


               
               GGGGCAGACGGGCTGGGAAGGGCATACAACCCACCCTCTGAATGCACATTTCACTTCCAC
CTCCACTCATGGGTTCCCATGCCATGCCTGCCACCAACCAGCTGAACAGTCCTGGGCAAG
TCACCTTAACCCCTCGGAACCTCCGTTTCTCTTGATCACAGTGAGAAGCTCGGACTAGAA
GACTCCCAGGGGGCCTTCTGAACTCTTGGAAATTGGGCTCCTTTGAGAAGCTTGAAGCAC
GAAGAGACTGGGGTAGGGAGGAAATCGGACTTCATCACCTCTCCAGGGATAGGGCTGAGC
CAGGTGATATCATAATGGGCAGTGCCAATCCTAGCGAGGGGATCAGGGTGGGGTGGGAGC
AGGAAGCCTGTGAGGGAGGGAAGCTGAGAGATCCTGCACAGGAGCGGGTCATAGCAGCTA
AGGGCACCTGCCGGGCTTTCTGGGAAGGGGGGGAGGGGTGGTCACTGATGTCTTGCAGGA
GCCCTTGGTAGGTAGAGCCCGCCACAGCATCCCCTAGACTCCACTATGTTCCTCTTTTCC
CGTAAGACCAAGACCCCCATCAGCACCTACAGTGACTCCTACAGGGCTCCTACCTCCATC
AAGGAGGTCTATAAGGACCCACCTCTGTGGGCCTGGGAAGCCAACAAGTTTGTGACCCCG
GTAAGTGAAGAATTGGGATGGGGGGTTGGGAGTGGGGCAGGCAGGCCAGAGTGTATGACT
GTGTGTGTCTAGGTGACGGACAGTATGTGGTTGTCATGTGTTTGTAATTACTTGCAGCAC
TGTGTGTGCATGATTCATTTGCTTAGGCATGGAATCTGTAATGATAAAATAGTACAAGGC
CTGACCTCATGGTGCCTGCCTACTCCCATCAGGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCAGACGGGCTGGGAAGGGCATACAACCCACCCTCTGAATGCACATTTCACTTCCAC
CTCCACTCATGGGTTCCCATGCCATGCCTGCCACCAACCAGCTGAACAGTCCTGGGCAAG
TCACCTTAACCCCTCGGAACCTCCGTTTCTCTTGATCACAGTGAGAAGCTCGGACTAGAA
GACTCCCAGGGGGCCTTCTGAACTCTTGGAAATTGGGCTCCTTTGAGAAGCTTGAAGCAC
GAAGAGACTGGGGTAGGGAGGAAATCGGACTTCATCACCTCTCCAGGGATAGGGCTGAGC
CAGGTGATATCATAATGGGCAGTGCCAATCCTAGCGAGGGGATCAGGGTGGGGTGGGAGC
AGGAAGCCTGTGAGGGAGGGAAGCTGAGAGATCCTGCACAGGAGCGGGTCATAGCAGCTA
AGGGCACCTGCCGGGCTTTCTGGGAAGGGGGGGAGGGGTGGTCACTGATGTCTTGCAGGA
GCCCTTGGTAGGTAGAGCCCGCCACAGCATCCCCTAGACTCCACTATGTTCCTCTTTTCC
CGTAAGACCAAGACCCCCATCAGCACCTACAGTGACTCCTACAGGGCTCCTACCTCCATC
AAGGAGGTCTATAAGGACCCACCTCTGTGGGCCTGGGAAGCCAACAAGTTTGTGACCCCG
GTAAGTGAAGAATTGGGATGGGGGGTTGGGAGTGGGGCAGGCAGGCCAGAGTGTATGACT
GTGTGTGTCTAGGTGACGGACAGTATGTGGTTGTCATGTGTTTGTAATTACTTGCAGCAC
TGTGTGTGCATGATTCATTTGCTTAGGCATGGAATCTGTAATGATAAAATAGTACAAGGC
CTGACCTCATGGTGCCTGCCTACTCCCATCAGGGTA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               243-438, - strand, RNAz p=0.993617
               

               
               476-675, - strand, RNAz p=0.88018

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               243-438, - strand, RNAz p=0.993617
               

               
               476-675, - strand, RNAz p=0.88018

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               243-876, gnl|bosTau2|chr8 (41173656-41173030)
               

               
               243-876, gnl|Hg17|chr9 (34387919-34387310)
               

               
               243-876, gnl|Mm7|chr4 (41655909-41655359)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               243-876, gnl|bosTau2|chr8 (41173656-41173030)
               

               
               243-876, gnl|Hg17|chr9 (34387919-34387310)
               

               
               243-876, gnl|Mm7|chr4 (41655909-41655359)

	243-438, - strand, RNAz p=0.993617
	476-675, - strand, RNAz p=0.88018

	243-876, gnl\|bosTau2\|chr8 (41173656-41173030)
	243-876, gnl\|Hg17\|chr9 (34387919-34387310)
	243-876, gnl\|Mm7\|chr4 (41655909-41655359)