Non-Coding RNA Search

Ss1.1-Utr2-C0001812_K16.5

Sequence:


               
               CGAAGTCGCTCTGGTTCTTCTCTGCCTCCTCATCAGAAGTCTAAAACGCCATCAAGACAA
AGTCGTTCCAGTTCATCTCCTCAACCTAAAGTGAAATCTGGAACACCACCGAGGCAGGGG
TCCGTAACAAGTCCTCAGGCAAATGAACAATCTGCAACACCACAGAGACGGAGCCATTCT
GAGTCATCACCTGACCCTGAGGTGAAGTCCATGACCCCTTTGAGACATAGCTGCTCTGAG
TCTTCTCCTAGAGTGAAATCTAGCTCACCTCCAAGACGGAGCCGATCTGGGTCATCATCT
CCACAACCCAAAGTGAAGGCGGTCATGTCACCAGTCCAGAGCCGTTCTGGCTTCTCTTCT
CCAAGTCCTAGTAGAGTGACATCTAAAACTCCTCCAAGGCAAAGCAGATCAGAGTCTCCA
TGCTCCAAGGTAGAGTCTAGATTGTTGCAAAGAAACAGCCGTTCTAGGTCCCCATCTCCA
GATACCAAAGTGAAACCGGAAACACCACTGCTGCAAAGTCACTCAGGGTCTACTTCGCCG
TGCCCCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAAGTCGCTCTGGTTCTTCTCTGCCTCCTCATCAGAAGTCTAAAACGCCATCAAGACAA
AGTCGTTCCAGTTCATCTCCTCAACCTAAAGTGAAATCTGGAACACCACCGAGGCAGGGG
TCCGTAACAAGTCCTCAGGCAAATGAACAATCTGCAACACCACAGAGACGGAGCCATTCT
GAGTCATCACCTGACCCTGAGGTGAAGTCCATGACCCCTTTGAGACATAGCTGCTCTGAG
TCTTCTCCTAGAGTGAAATCTAGCTCACCTCCAAGACGGAGCCGATCTGGGTCATCATCT
CCACAACCCAAAGTGAAGGCGGTCATGTCACCAGTCCAGAGCCGTTCTGGCTTCTCTTCT
CCAAGTCCTAGTAGAGTGACATCTAAAACTCCTCCAAGGCAAAGCAGATCAGAGTCTCCA
TGCTCCAAGGTAGAGTCTAGATTGTTGCAAAGAAACAGCCGTTCTAGGTCCCCATCTCCA
GATACCAAAGTGAAACCGGAAACACCACTGCTGCAAAGTCACTCAGGGTCTACTTCGCCG
TGCCCCCAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               277-393, - strand, RNAz p=0.565431

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               277-393, - strand, RNAz p=0.565431

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-549, gnl|bosTau2|chr25 (3724752-3724201)
               

               
               1-549, gnl|Hg17|chr16 (2752970-2753524)
               

               
               1-549, gnl|Mm7|chr17 (21996343-21996874)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-549, gnl|bosTau2|chr25 (3724752-3724201)
               

               
               1-549, gnl|Hg17|chr16 (2752970-2753524)
               

               
               1-549, gnl|Mm7|chr17 (21996343-21996874)

	1-549, gnl\|bosTau2\|chr25 (3724752-3724201)
	1-549, gnl\|Hg17\|chr16 (2752970-2753524)
	1-549, gnl\|Mm7\|chr17 (21996343-21996874)