Non-Coding RNA Search

Ss1.1-Utr2-C0001814_F22.5

Sequence:


               
               CCCCCCCCCCCCCCAGCAAGAAACCCTGGACTGTCTGCCGGGCAGGTGGCTGTGGCAGGG
CGGGGGCTGAAATGACATGGGCCCTGCCGCTTTCCAGGCCGCTCGTCAGTCCGCGCCGTC
TCTGCTGGGCCTCGCTTGCAGCTGCAGGGGCCCGTGGGTCCGTATTGAGGCGGTGGCCTT
GGGGTAGACGCCTCCTTTTATTTTACTACTTGATATAAAACATTTATTTTTGACCAGGCC
TGTGGCTTCCATTAGCAATATGTTTCCTTCCTCTAATGTGCACGTACTGGCTCCGTTGGC
TCCGTCTCGTGAGTGCTTTTGAATTGAGAGGATTGTGTAACTCAGCAAGATCACGCTCAC
TTTTTTCTTGCCCAGGCTGCGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCCCCCCCCCCAGCAAGAAACCCTGGACTGTCTGCCGGGCAGGTGGCTGTGGCAGGG
CGGGGGCTGAAATGACATGGGCCCTGCCGCTTTCCAGGCCGCTCGTCAGTCCGCGCCGTC
TCTGCTGGGCCTCGCTTGCAGCTGCAGGGGCCCGTGGGTCCGTATTGAGGCGGTGGCCTT
GGGGTAGACGCCTCCTTTTATTTTACTACTTGATATAAAACATTTATTTTTGACCAGGCC
TGTGGCTTCCATTAGCAATATGTTTCCTTCCTCTAATGTGCACGTACTGGCTCCGTTGGC
TCCGTCTCGTGAGTGCTTTTGAATTGAGAGGATTGTGTAACTCAGCAAGATCACGCTCAC
TTTTTTCTTGCCCAGGCTGCGCCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               260-356, - strand, RNAz p=0.622865

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               260-356, - strand, RNAz p=0.622865

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC071582, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC071582, -

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               84-373, gnl|bosTau2|chr19 (46102452-46102162)
               

               
               84-373, gnl|canFam2|chr9 (5583549-5583166)
               

               
               84-373, gnl|dasNov1|scaffold_18185 (1287-1668)
               

               
               84-373, gnl|hg17|chr17 (74304503-74304899)
               

               
               84-373, gnl|Hg17|chr17 (74304883-74304616)
               

               
               84-373, gnl|mm7|chr11 (118369729-118370045)
               

               
               84-373, gnl|Mm7|chr11 (118370032-118369794)
               

               
               84-373, gnl|monDom2|scaffold_18 (8128876-8129230)
               

               
               84-373, gnl|panTro1|chr19 (77866558-77866955)
               

               
               84-373, gnl|rheMac2|chr16 (74055116-74055512)
               

               
               84-373, gnl|rn3|chr10 (108280405-108280733)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               84-373, gnl|bosTau2|chr19 (46102452-46102162)
               

               
               84-373, gnl|canFam2|chr9 (5583549-5583166)
               

               
               84-373, gnl|dasNov1|scaffold_18185 (1287-1668)
               

               
               84-373, gnl|hg17|chr17 (74304503-74304899)
               

               
               84-373, gnl|Hg17|chr17 (74304883-74304616)
               

               
               84-373, gnl|mm7|chr11 (118369729-118370045)
               

               
               84-373, gnl|Mm7|chr11 (118370032-118369794)
               

               
               84-373, gnl|monDom2|scaffold_18 (8128876-8129230)
               

               
               84-373, gnl|panTro1|chr19 (77866558-77866955)
               

               
               84-373, gnl|rheMac2|chr16 (74055116-74055512)
               

               
               84-373, gnl|rn3|chr10 (108280405-108280733)

	84-373, gnl\|bosTau2\|chr19 (46102452-46102162)
	84-373, gnl\|canFam2\|chr9 (5583549-5583166)
	84-373, gnl\|dasNov1\|scaffold_18185 (1287-1668)
	84-373, gnl\|hg17\|chr17 (74304503-74304899)
	84-373, gnl\|Hg17\|chr17 (74304883-74304616)
	84-373, gnl\|mm7\|chr11 (118369729-118370045)
	84-373, gnl\|Mm7\|chr11 (118370032-118369794)
	84-373, gnl\|monDom2\|scaffold_18 (8128876-8129230)
	84-373, gnl\|panTro1\|chr19 (77866558-77866955)
	84-373, gnl\|rheMac2\|chr16 (74055116-74055512)
	84-373, gnl\|rn3\|chr10 (108280405-108280733)