Non-Coding RNA Search

Ss1.1-Utr2-C0001814_I16.5

Sequence:


               
               TTTAACATGCCAGTTGCTTTGACTCAACAAAGTTCCAAAGTGTTTGATGCCAAAGACCAC
CTACAACACAAGAACCAGCCATGTGAATTAGTAAAAGCTGATGGCTGTTTGGTAAAAGAA
GAGGTAGATGTGGCCATTGTAGCTGCCACAGATTGTTTGAAAGAAGGAGGCAGTGCAAAT
GCTTTGTCTTGCAGTCCTCCGAAAAATGGAGGTTTATGCTTAAATGATTCAAATTTAAGA
GATGAAAATTTCAAGTTACCTGACTTTTCCTTTCAGGAAGATAGGAGTGCTATATTTATA
AAACAATCTGCAACAGAAGAGTCAAGTAATTTAGATCTTCAAGATAATAAAGATGTAATC
CAGGATACCACTTCAACTTTGTGTGTTTCAAGTGAAAATATGTACTCCTCATTGTCCTGT
CTTCCAGTACCTGGGTCTTTGTGTGGATCATTAATTGGAAGTAAAGTGCAGGATGATTGT
TTACCCCAGAATGAGTATAAAGATAACATAAAAGATGCAGTAACTGTGCATGAAGAGGTG
GAAGAGAATGTTGCTCCAGGTGGGGAACCTTTGAAGGAGACTGATCTTCTGAAACAGGAA
AAATGTAAAAACATACTTCATCAGCCACTGATTGAAAAGATGGAAGATAGAAAGGTAGAT
TCTGACCAGATGGTAATTAGAGCTGAATCTTTGAATCACCCTGATAACAGTTCTTCTACA
GCTGCAGAATCTCAAGTAGAGCTTTCTGGTGCTAATGCCCCAGAGTCTCCTGATCATTGT
GAAGGTCTCACTTTTTCAAGCAGTGATATCGATGGGCAAGACTTAGATTACTTTAACATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAACATGCCAGTTGCTTTGACTCAACAAAGTTCCAAAGTGTTTGATGCCAAAGACCAC
CTACAACACAAGAACCAGCCATGTGAATTAGTAAAAGCTGATGGCTGTTTGGTAAAAGAA
GAGGTAGATGTGGCCATTGTAGCTGCCACAGATTGTTTGAAAGAAGGAGGCAGTGCAAAT
GCTTTGTCTTGCAGTCCTCCGAAAAATGGAGGTTTATGCTTAAATGATTCAAATTTAAGA
GATGAAAATTTCAAGTTACCTGACTTTTCCTTTCAGGAAGATAGGAGTGCTATATTTATA
AAACAATCTGCAACAGAAGAGTCAAGTAATTTAGATCTTCAAGATAATAAAGATGTAATC
CAGGATACCACTTCAACTTTGTGTGTTTCAAGTGAAAATATGTACTCCTCATTGTCCTGT
CTTCCAGTACCTGGGTCTTTGTGTGGATCATTAATTGGAAGTAAAGTGCAGGATGATTGT
TTACCCCAGAATGAGTATAAAGATAACATAAAAGATGCAGTAACTGTGCATGAAGAGGTG
GAAGAGAATGTTGCTCCAGGTGGGGAACCTTTGAAGGAGACTGATCTTCTGAAACAGGAA
AAATGTAAAAACATACTTCATCAGCCACTGATTGAAAAGATGGAAGATAGAAAGGTAGAT
TCTGACCAGATGGTAATTAGAGCTGAATCTTTGAATCACCCTGATAACAGTTCTTCTACA
GCTGCAGAATCTCAAGTAGAGCTTTCTGGTGCTAATGCCCCAGAGTCTCCTGATCATTGT
GAAGGTCTCACTTTTTCAAGCAGTGATATCGATGGGCAAGACTTAGATTACTTTAACATT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               554-673, + strand, RNAz p=0.572641

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               554-673, + strand, RNAz p=0.572641

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-840, gnl|bosTau2|chr7 (53008533-53007691)
               

               
               1-840, gnl|Hg17|chr5 (79768984-79769814)
               

               
               1-840, gnl|Mm7|chr13 (89627906-89627094)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-840, gnl|bosTau2|chr7 (53008533-53007691)
               

               
               1-840, gnl|Hg17|chr5 (79768984-79769814)
               

               
               1-840, gnl|Mm7|chr13 (89627906-89627094)

	1-840, gnl\|bosTau2\|chr7 (53008533-53007691)
	1-840, gnl\|Hg17\|chr5 (79768984-79769814)
	1-840, gnl\|Mm7\|chr13 (89627906-89627094)